Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3562 |
Symbol | |
ID | 5611719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4342763 |
End bp | 4343458 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934515 |
Product | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein |
Protein accession | YP_001475294 |
Protein GI | 157376694 |
COG category | [C] Energy production and conversion |
COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1 |
TIGRFAM ID | [TIGR03149] cytochrome c nitrite reductase, Fe-S protein |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATCT CAAAAAGACA TTTTCTTACC GGTTGCGGCA CCTTGATCGC GGGATTCTCT ATCTACTCGG TTGCGAAGGA GCTTGCAGAG TCAGAGGCTG GTGTCAGTGT CGACCAAACT CAAACAATCA AATATGCCAT GGTACATGAT GAAAACCTCT GCATCGGCTG TAACGCCTGT GAGCAGGCTT GCCGACAGGT TAACCATGTG CCCGATGGCG TCTCAAGGGT CGTGATCAAT CGTACAGGTC CATTTGGTGA GTATCCGGAT CAGAGTTACC GTTTCAGTCG TAAGTCTTGC CAGCATTGCG AAGATGCCCC CTGCGTAAAG GTGTGCCCTA CGGGCGCCGC CTACATAGAC TCAGAGACCG GGATTGTCGG TGTTAATCCT GACAAGTGTG TCGGTTGCCA ATATTGCATT GCGGCTTGTC CCTATCAGGT TAGATTTATT AATCCAGTGA CTCAAACGGC CGACAAGTGT GATTTTTGCA GAGAGACTCA GCTTAAGCTG GGCAAACAAC CAGCTTGCGT AGAGGCGTGT CCGACTCATG CCTTAGTGTT TGGTAATATC AGAGATCCGG AGTCTGAGTT AGTCAAAACG TTAAAATCGA AACCGACTTA TCGAGCTAAA ACGGATTTAG GCACCCGCCC TAAGTTGTTC CATGTATCGA CTATTGATGG GGAGATAGTG TTATGA
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Protein sequence | MDISKRHFLT GCGTLIAGFS IYSVAKELAE SEAGVSVDQT QTIKYAMVHD ENLCIGCNAC EQACRQVNHV PDGVSRVVIN RTGPFGEYPD QSYRFSRKSC QHCEDAPCVK VCPTGAAYID SETGIVGVNP DKCVGCQYCI AACPYQVRFI NPVTQTADKC DFCRETQLKL GKQPACVEAC PTHALVFGNI RDPESELVKT LKSKPTYRAK TDLGTRPKLF HVSTIDGEIV L
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