| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3561 |
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| Symbol | |
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| ID | 5611718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4341816 |
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| End bp | 4342766 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934514 |
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| Product | polysulphide reductase, NrfD |
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| Protein accession | YP_001475293 |
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| Protein GI | 157376693 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.90261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAT TTCATTTCGA TGGATTAGTC TGGCATTGGC CTATCGCAAT CTACCTGTTC
TTGGCAGGCT TGTCGGCAGG GGCGGTATTT TTCGGCATCC TGTTGAAACA TTTTAAATTG
GGTAAGAAAG CCTATCAGTC TCGATTTATT CAAGCCGCCG CCCTGATAGC ACCCGTTACG
GTTTGTGCCG GCTTAGGTAT TTTGGTTCTC GATCTCACTA AGCCCTTCGA TTTTTGGAAG
ATCCTGGTTT TTTACAACTC CACTTCGGTC ATGTCCATGG GTGTGCTGGT ATTGATGGTC
TATCAGCTGA TGTTATTTGC CTGGATAGGC GCCATATTTA GTACGCCTGT CGTGCAATGG
TGTGAAGGGC GTGAGGGACG GTGGAGTCTG CTCACAAGCA GCTTGATAAA ATTGCAGCAA
TGGGAAGATG TGATCACAGG GATACTACTT ATATTATCTC TGTCATTAGG CGCCTATACC
GGATTCCTGC TGTCGGCCCT AATCGGCTTC CCTCTGCTCA ATAACCCGGT TTTGCCTGTC
TTGTTCCTGG TATCGGGCCT CAGCTCAGGC GCCGCAGCCA CTCTGCTAGT TGGTGTGTTG
CTCAAGGGGA ATCCGAATGG CACTGAGGTG CGCTTTATCC ATGGGATTGA GATCCCCATG
ATACTCATTG AGATGGCGAT ACTCTTTACC TTCTTCGCCG GTCTTATCTT GTCGGGTGGG
CAGAGCCAGG TCGCGGCATT AGATGCGTTG GGTGAAGGCT TCTGGGGCTG GATCTTCTGG
GGAGGCGTGG TTGGCTTAGG TTTGACGCTG CCACTGGCGT TTAACTTATG GATGAAGGTC
TCTGCCGATA GAAAATTTGC CTATGTCGCG GTAACGGCCA GTTTTAGTTT AGTGGGTGTG
TTATTGCTGC GTAATTTTAT TCTCTATACC GGCCAGATGA CGGGGACCTA G
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| Protein sequence | MSAFHFDGLV WHWPIAIYLF LAGLSAGAVF FGILLKHFKL GKKAYQSRFI QAAALIAPVT
VCAGLGILVL DLTKPFDFWK ILVFYNSTSV MSMGVLVLMV YQLMLFAWIG AIFSTPVVQW
CEGREGRWSL LTSSLIKLQQ WEDVITGILL ILSLSLGAYT GFLLSALIGF PLLNNPVLPV
LFLVSGLSSG AAATLLVGVL LKGNPNGTEV RFIHGIEIPM ILIEMAILFT FFAGLILSGG
QSQVAALDAL GEGFWGWIFW GGVVGLGLTL PLAFNLWMKV SADRKFAYVA VTASFSLVGV
LLLRNFILYT GQMTGT
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