Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3559 |
Symbol | |
ID | 5611716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4338313 |
End bp | 4340310 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934512 |
Product | TonB-dependent receptor |
Protein accession | YP_001475291 |
Protein GI | 157376691 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00145171 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTACTC AAGCTAGACA ATCAAACAAA TTATCAAAAT TAGCCATGCT AATCGGCAGT GCTCTGGCTC TGTCTGCGTC GTCGTCCGTG ACGTTTGCGG CCGATTCATC TCAAACAGAT TCTGGTGTGA CTAACACAGT CGATGAGGTT ATTACCGTTA TCGGTCGCAG TGAAAATACG CCACTGAATA TTGCCGCCAA TGTGAACATT ATCGATGCGG CGGCCATCGA GATGAGCGGT GCGACGACAC TGACCGAAGT ACTGCGTGGC CAGAGTGGCA TACAGATCTC GGACTCGAAT TCCGGCGCCG TTTTCGCTAT GCGTGGTTTC AGTGCTGGTC AGGCCGCAAA CAACACCCTC TTGCTTGTCG ATGGACGTCG TTTGAATAAT ATCGATATCG CGGCGCCAAG CATCAATGCC ATCCCACTCA ATCAGATAGA GCGCGTCGAG ATACTGTCGG GCAGTGCCGG TGTACTCTAC GGCGATCAGG CGGTGGGCGG TGTGATTAAT ATCATCACCA AGGCGCCAAA CAGCGCGGGC GGCGGCATTC AAGTGTCTGG AGGCAGCTTC GATACCTATG AAGGTAAAGG TGATATCTCG GGTGCCATCA GTAATACCTG GCGTTACTAC GCTGCGGCCA GCTATAACCA AGGTGATAAC TATCGTGAGC ACAATGCCAA CAAGACCTCG TCTGTATTAG GTCGACTTCA ATATCAAACC GAGTCGGATA ACTTCTTCGT TGAGACCAGC TACTACGATA ACGATCGTGA GATGGCGGGG TCATTGACCA AAGAGCAGAT TAAAGATAAT CCACGTCAGG TTAATCCATT TAATAAAGAT GACTATCAGC ATGAGATGAC AACGGCTATT CGCACGGGTT ATCAGCATCA ACTCACCGAT GCCTGGTCGT TAGGTGCGGA TATCAACTAT ACCGATACTC AGGTGACCGG GATCAGTTGG GGTTCGCCAA GTAAGAATAA ACGCTCTTTC CTCGAGTTCA CTCCGAAAGC GGTAGCGAAT ATTACGACAG AAAAAGGCGA CTTGAATATC GTTACCGGTA TCGACCTGAG CCGGGGGGAA TCTGAGTTTG ATTGGGGACG AAGTAATGTG CAGAAGGTGG CTAGCGCCTA TGCTCAAGCC AGTGTGCCGT TAACTCAAAG CCTGAGTTAT GTAGTGGGTG GTCGTTACTC CGAGGTGACT GACGATCTTG TCGATGGTGA CGTTTACCCT CAGGGCATAG AGCTTGATCA GGATGCGCAT GCGTTCGAGT TGGGCTTGAA CTATCGTCCG GGCACTTCAC ACAGATTCTA TCTTCGCGCC GATGACAACT TCCGTTTCGC TAAGGTCGAT GAGCAGGCTT ATACCTCACC GGGTGTGATG GGTCTTAAGC CGCAGACGGG TCGTTCATAT GAGGCGGGTT GGGATTGGTC TCCTGCGAGC CACACATTGC GCTTAAGCCT GTATCGTTTG GACTTAGAGG ATGAGATTGT ATTTGACCCG AGTGCTGAGA CCCCTGATGG TGGCAAATTT CCTGGTGCCA ACGTGAACGC CGATGCATCG CGCCGTTATG GCTCGAGTCT GGATTGGGAC TGGCAGATCA CTAAGATGGT GCAACTGGGT CTGGAGTACA ACTATATCGA CGCCGAGTTT ACCGAAGGAG TAAATGAAGG CAATCAGCTC TCCTGGGTCG CCGAGCACTC CGGCCGTGGT TACTTCAGTA TAGATGCTAA CCAGAACTGG CAGGTGTTTA CCGAGCTGTT ATACACCGGA GAGCGTTTCA TCGAAGGCGA TAACGGTAAT GCTGACCCTA AGCTGGAGTC ATACTGGTTA ACTAATTTAG CGATTAACTA CACCCGTGAT GCCTGGCTTG CCAGCTTCCG CGTCGATAAC CTGTTCGATG AGCAATATGT CAGTGCCGGT TACTACAGTA GTTGGGGGAA TGGCTATTAT GCGGGTACCG GACGTGCCCT ACGTCTGACG GCAAGCTATC GCTTTTAA
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Protein sequence | MGTQARQSNK LSKLAMLIGS ALALSASSSV TFAADSSQTD SGVTNTVDEV ITVIGRSENT PLNIAANVNI IDAAAIEMSG ATTLTEVLRG QSGIQISDSN SGAVFAMRGF SAGQAANNTL LLVDGRRLNN IDIAAPSINA IPLNQIERVE ILSGSAGVLY GDQAVGGVIN IITKAPNSAG GGIQVSGGSF DTYEGKGDIS GAISNTWRYY AAASYNQGDN YREHNANKTS SVLGRLQYQT ESDNFFVETS YYDNDREMAG SLTKEQIKDN PRQVNPFNKD DYQHEMTTAI RTGYQHQLTD AWSLGADINY TDTQVTGISW GSPSKNKRSF LEFTPKAVAN ITTEKGDLNI VTGIDLSRGE SEFDWGRSNV QKVASAYAQA SVPLTQSLSY VVGGRYSEVT DDLVDGDVYP QGIELDQDAH AFELGLNYRP GTSHRFYLRA DDNFRFAKVD EQAYTSPGVM GLKPQTGRSY EAGWDWSPAS HTLRLSLYRL DLEDEIVFDP SAETPDGGKF PGANVNADAS RRYGSSLDWD WQITKMVQLG LEYNYIDAEF TEGVNEGNQL SWVAEHSGRG YFSIDANQNW QVFTELLYTG ERFIEGDNGN ADPKLESYWL TNLAINYTRD AWLASFRVDN LFDEQYVSAG YYSSWGNGYY AGTGRALRLT ASYRF
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