| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3558 |
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| Symbol | |
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| ID | 5611826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4337482 |
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| End bp | 4338087 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934511 |
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| Product | lipolytic enzyme, G-D-S-L |
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| Protein accession | YP_001475290 |
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| Protein GI | 157376690 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2755] Lysophospholipase L1 and related esterases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0285978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATCAC TGTTAGCCAT ATTGCTCCCG ATAGCTTTAC TCCTGCTATC GGCTTGCTCT
GGCCCTAAAC TTGAGCCGCT TTCGTCTGAT GCCGAGATCT GGGCATTTGG AGATAGCCTG
ACCTATGGCA AGGGGGCGGC GAGGGGGCAA GATTACCCTA CGATGTTGGC TGAGCTCTCA
CAAAAGCGGG TGATCAATGC CGGGGTATCC GGCGAGACCA CCACACAAGG GCTGGATAGG
CTGACGCAGC TCTTAGAATA CGATTCACCG GATCTGCTGA TCTTGATGGA AGGCGGTAAC
GACTTTTTGC GTAACCAGGA TATTGGCCAG ACTAAGGCTA ATCTGGCGCA GATGATTGAG
CTGGCCCAGA GACGATCGAT CCCTGTGGTG CTGGTGGCCG TGCCCCGGAA GAGTATCTTT
CTCTCTCCGG CAGCAATCTA CAGTGAGCTG GCCGAAACCT ATGGGGTGAT CTTGATAGAA
GATGAGTTAA CGGATCTATT GAAAACAGCA TCGATGAAGT CAGATACGAT TCACCTTAAC
GGGGCGGGTT ACAGGGCTTT AGCCGAAGTG ATACACCGTC GCCTTATTCA GGTTGAAGCC
CTGTAA
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| Protein sequence | MKSLLAILLP IALLLLSACS GPKLEPLSSD AEIWAFGDSL TYGKGAARGQ DYPTMLAELS
QKRVINAGVS GETTTQGLDR LTQLLEYDSP DLLILMEGGN DFLRNQDIGQ TKANLAQMIE
LAQRRSIPVV LVAVPRKSIF LSPAAIYSEL AETYGVILIE DELTDLLKTA SMKSDTIHLN
GAGYRALAEV IHRRLIQVEA L
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