Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3495 |
Symbol | |
ID | 5609976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4259496 |
End bp | 4260275 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640934447 |
Product | CDP-diacylglycerol--serine O-phosphatidyltransferase |
Protein accession | YP_001475227 |
Protein GI | 157376627 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1183] Phosphatidylserine synthase |
TIGRFAM ID | [TIGR00473] CDP-diacylglycerol--serine O-phosphatidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000947375 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00194912 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAAAATT TTGATAAAGA ATCAGTTAAG AGTAAAGGCA TCTATCTGCT ACCCAACCTG TTTACTACTG CTGGGTTATT TTCAGGATTT TACGCTGTAA TTGCATCAAT GAATGGACAA TTTGAATCTG CAGCCATTGC AGTCTTCGTT GCCATGCTCT GTGATGGCCT GGATGGGCGC GTTGCCAGGA TGACTAATAC TCAGAGTGAG TTTGGTGCTG AATATGACAG CATGGCAGAT ATGGTCTCTT TTGGTGTTGC CCCCGCCTTG ATCGCCTACA ATTGGGGGCT AGCTGATTTA GGTAAGGTAG GTTGGCTTGC TGCTTTTATC TATTGTGCGG GAGCGGCTCT TAGGTTGGCT CGATTCAATA CCCAAGTCGG AGTTGAAGAT AAAAGGTATT TTCAAGGTCT GGCAAGTCCA GCCGCTGCTG CTCTTATCGC CGGCAGTATC TGGTTTGGTG GTCAAAGTGG GGTTGAAGGT TCTGATGTTA GCTGGTTGGT GGCTTTAGTT ACGATAATTT CAGGTTTACT AATGGTAAGC AATTTTCGCT ATCACTCATT TAAAGATTTC GACTGGCGCG GTAAAGTGAA TTTTATTGTC ATTTTAATCG TTGTCGGAAT ATTTGTTTTC ATCTCGATAG AACCTGCGCT AATTTTATGC TCAATTTTCT ATATCTACGC CTTATCCGGA CCCATTATAA CGATCTACCG TATTCGTAAG CTGAAGCATC CTGCTACAGT TAATGATGAC TCTATGGTGA AAAAAGACGG TGAGGAGTGA
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Protein sequence | MQNFDKESVK SKGIYLLPNL FTTAGLFSGF YAVIASMNGQ FESAAIAVFV AMLCDGLDGR VARMTNTQSE FGAEYDSMAD MVSFGVAPAL IAYNWGLADL GKVGWLAAFI YCAGAALRLA RFNTQVGVED KRYFQGLASP AAAALIAGSI WFGGQSGVEG SDVSWLVALV TIISGLLMVS NFRYHSFKDF DWRGKVNFIV ILIVVGIFVF ISIEPALILC SIFYIYALSG PIITIYRIRK LKHPATVNDD SMVKKDGEE
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