| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3489 |
|---|
| Symbol | |
|---|
| ID | 5612734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4247622 |
|---|
| End bp | 4248809 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640934437 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_001475221 |
|---|
| Protein GI | 157376621 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000731788 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTA TTGATATGAA TTTTTTTAAT CGCCCTTTAA AAACACTTAT CCTTGCGACC
ACGGTCGCTT GTTCTTTCGC TTATGCCGCC CCGGTCGTTA CCCCCAACGC ACCAACAGTT
GCCGCAAAAG CCTTCATCTT AATGGATTAC AATACTGGAC AAGTCATAGC AGAAGAAAAT
GCCTATGAAA GCTTAAACCC AGCAAGTTTG ACCAAGATGA TGACCAGTTA TGTTATTGGT
CATGAAATTA AGGTCGGAAA TATCTCACCT GACGATAAAG TCACTATCAG TAAGAAAGCC
TGGTCGAAAA ACTTCCCAGA CTCTTCGAAA ATGTTTATCG AAGTGGGTAA GCAAGTTACT
GTCGATGATC TCAATCATGG CATCATCATC CAATCAGGTA ACGATGCATG TGTTGCCATG
GCAGAGCATA TTGCTGGTAC AGAAGATGGC TTCGTCGATC TGATGAACTC ATGGTCAAAG
CAACTTGGCA TGGAAGACAG CTATTTTGAA AACTCTCATG GTCTGGATTC TGAGAACCAC
AAAACTACAG CCTACGATAT GGCGCTTTTA GGTGCAGCAC TTATCCGTGA TGTACCTGAA
GAATATGTAT TATATAAAAA GAAATCTTTC ACTTACAACA GTATCAAACA GTATAACCGT
AATGGACTGC TGTGGGATAA GAGTATGAAT GTCGACGGCA TTAAGACCGG TCATACGTCT
GGTGCTGGTT ACAACTTAGT CACTTCTGCA ACTAAGGATG GCATGCGTTT AGTTGCAGTT
GTAATGGGCA CAAAAAGTGA GTCAGCTCGT AAAGCTGAAA GCAAAAAAAT TCTAAACTAT
GGATTCCGCT TCTTCGAAAC TATTACTCCT TATAAAGCAG GCGAAAGCTT CGTTACTCAA
CAGATCTGGT ACGGTGATAA AGAGTCTGTA GACTTAGGTG TACTCACAGA CACACCAATC
ACGATCAGCC GCGGTCAGGC TAAAAACCTA CAGGCAAACT TCGAGTTAAC TAAAGAGCTT
ACGGCTCCAT TAGCCAAGGG CGAAACTGTC GGACGGATCT TCTTCCAGCT TAACGGTAAA
GATATTGCTC AATTCCCGCT TGTAACACTG CAGGAAGTTA ATGAGGGAAG TTGGTTTAGC
AAGTTAATGG ATTACTTCAA GCAGATGTTC TCAGGCTGGT TCAGCTAA
|
|---|
| Protein sequence | MRLIDMNFFN RPLKTLILAT TVACSFAYAA PVVTPNAPTV AAKAFILMDY NTGQVIAEEN
AYESLNPASL TKMMTSYVIG HEIKVGNISP DDKVTISKKA WSKNFPDSSK MFIEVGKQVT
VDDLNHGIII QSGNDACVAM AEHIAGTEDG FVDLMNSWSK QLGMEDSYFE NSHGLDSENH
KTTAYDMALL GAALIRDVPE EYVLYKKKSF TYNSIKQYNR NGLLWDKSMN VDGIKTGHTS
GAGYNLVTSA TKDGMRLVAV VMGTKSESAR KAESKKILNY GFRFFETITP YKAGESFVTQ
QIWYGDKESV DLGVLTDTPI TISRGQAKNL QANFELTKEL TAPLAKGETV GRIFFQLNGK
DIAQFPLVTL QEVNEGSWFS KLMDYFKQMF SGWFS
|
|---|
| |