| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3486 |
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| Symbol | |
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| ID | 5612731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4244375 |
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| End bp | 4245481 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934434 |
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| Product | rod shape-determining protein RodA |
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| Protein accession | YP_001475218 |
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| Protein GI | 157376618 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG0772] Bacterial cell division membrane protein |
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| TIGRFAM ID | [TIGR02210] rod shape-determining protein RodA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0107855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000162732 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGTACGC AGAACCATAG ACCAAATATT TGGCAGCGTC TCCATATCGA TCTCCCACTC
TTATTCGGCA TTCTTACCTT GATGGGATTC GGCCTGTTCG TCATCTATTC TGCAGGCGGT
GAAGACTTGG CCCTGATGGA ACGGCAACTG GTTCGAATGG GCTTATCATT GGTGATCATG
TTTGTGGTTG CTCAGATTAA CCCGGAAGTA CTCAGACGCT GGGCCTTTCC CATCTATCTG
GCCGGGATTG TCTTGCTGCT GGGAGTGCAC TTTTTTGGTG AGATAAACAA GGGGGCACAA
AGGTGGCTAA ACCTTGGCTT CATGGAGTTT CAGCCGTCGG AGCTTATCAA ACTCGCCTTT
CCTATCACTA TGGCTTGGTA CATAAGTAAA TTCCCACTTC CGCCTAAGAA AAGATACTTA
GCCGGTGCAG GCGTTATCTT ACTTATTCCG ACACTCTTGA TTGCCAAACA ACCGGACCTT
GGAACCTCTA TTCTCGTCGC GGCTTCGGGG ATCTTCGTGT TGTTTTTATC GGGGATGAGC
TGGGCAATTG TTGGTACCTT CATCGGTGGT GTCCTCGCCA TGCTACCTGT CTTGTGGTTT
TTTCTGATGC ATGACTATCA ACGAACCCGG GTACTTACTC TACTCGACCC TGAAAAAGAT
CCTTTGGGCG CTGGCTATCA TATTATTCAA TCGAAGATCG CAATCGGCTC GGGCGGGATG
TGGGGTAAAG GTTGGCTTGA CGGTACACAG TCGCAACTCG AGTTTCTCCC GGAACGTCAT
ACAGACTTTA TTTTCGCCGT TATCGGTGAG GAATTTGGTT TAATCGGTAG CTTACTGTTA
CTTGCCATAT ACCTCTATGT CATCGGCAGA GGCCTTGTTA TTGCATCCCG AGCACAAACC
AGTTTCGCTC GACTGTTGGC TGGCAGTATA ACCTTAACCT TCTTCGTTTA TATTTTTGTT
AATATCGGCA TGGTTTCGGG TCTGCTACCT GTAGTCGGTG TTCCCCTGCC CTTAATTAGT
TATGGGGGCA CGTCTATGCT AACTTTGATG ACTGGATTTG GTATCTTAAT GAGCATACAT
ACACACAGGC GTTTTATCGA CAGATAA
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| Protein sequence | MSTQNHRPNI WQRLHIDLPL LFGILTLMGF GLFVIYSAGG EDLALMERQL VRMGLSLVIM
FVVAQINPEV LRRWAFPIYL AGIVLLLGVH FFGEINKGAQ RWLNLGFMEF QPSELIKLAF
PITMAWYISK FPLPPKKRYL AGAGVILLIP TLLIAKQPDL GTSILVAASG IFVLFLSGMS
WAIVGTFIGG VLAMLPVLWF FLMHDYQRTR VLTLLDPEKD PLGAGYHIIQ SKIAIGSGGM
WGKGWLDGTQ SQLEFLPERH TDFIFAVIGE EFGLIGSLLL LAIYLYVIGR GLVIASRAQT
SFARLLAGSI TLTFFVYIFV NIGMVSGLLP VVGVPLPLIS YGGTSMLTLM TGFGILMSIH
THRRFIDR
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