| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3474 |
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| Symbol | |
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| ID | 5613464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4229701 |
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| End bp | 4230576 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934422 |
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| Product | CBS domain-containing protein |
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| Protein accession | YP_001475206 |
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| Protein GI | 157376606 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4535] Putative Mg2+ and Co2+ transporter CorC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.42 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00607831 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGACG ATATCCCCCC CAGTACCAGC GCCCAAAAAA AGGGCTGGTT AGAAAAAGTA
AGCCAGTTGT TTCAGGGCGA ACCTCAAAGC CGTGATGATC TTGTTGATGT AATACACGAT
GCGGAGCAAC GTGAAGTTAT CTCTGAAGAT ACTCGCGAAA TGATCAAAGG TGTATTAGAG
GTATCTGATC TACGAGTCAG AGACATCATG ATTCCGAGAG CGCAAATTGT TGCACTTCAA
ATTGATAACA CGGTGGCAGA GCTCCTCTCT ACAGTTATTA GTTCGGCACA CTCCCGCTTT
CCCGTCGTTA ATGAAGATAA AGATCATATA GAAGGCATTT TACTGGCCAA AGATCTGCTT
CAATATGGGT TTAAAAACAA CGAAGAGCCT TTCTCATTAG GACAAGTGAT TCGTCCGGCT
GTTGTTGTCC CAGAAAGCAA GCGAGTCGAT GTGTTGCTTA AAGAATTCCG CTCTCAACGA
TATCATATGG CCATTGTGGT CGATGAATAT GGCGGGGTAT CGGGTCTGGT TACCATCGAA
GATATCCTCG AAGAAATTGT CGGTGAAATC GAAGATGAGT TTGTCCACGA CTCTGCAGAA
GAAACCGAGA TCCGTAAGGT GAGTAAACAG GTCTATATGA TCAAAGCGCT AACGCCTATC
GAAGATTTCA ATGAAGAGTT TCAAACCAAA TTCAGCGATG AAGAGTTTGA TACTGTCGGT
GGCTTGGTCT CACATGCATT TGGCCATCTT CCCGAGCGAA ATGAGAAGGT GAGCATTGAT
GGGATTGAAT TTACCGTGAT TAGCGCCGAT ACACGCCGAT TACTGCAACT CAGAGTTAAA
CTCCCCGATC CAAATACCGA AGAGAAAACG GCATAA
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| Protein sequence | MSDDIPPSTS AQKKGWLEKV SQLFQGEPQS RDDLVDVIHD AEQREVISED TREMIKGVLE
VSDLRVRDIM IPRAQIVALQ IDNTVAELLS TVISSAHSRF PVVNEDKDHI EGILLAKDLL
QYGFKNNEEP FSLGQVIRPA VVVPESKRVD VLLKEFRSQR YHMAIVVDEY GGVSGLVTIE
DILEEIVGEI EDEFVHDSAE ETEIRKVSKQ VYMIKALTPI EDFNEEFQTK FSDEEFDTVG
GLVSHAFGHL PERNEKVSID GIEFTVISAD TRRLLQLRVK LPDPNTEEKT A
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