| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3463 |
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| Symbol | |
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| ID | 5613529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4214278 |
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| End bp | 4215225 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934403 |
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| Product | ribose-phosphate pyrophosphokinase |
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| Protein accession | YP_001475195 |
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| Protein GI | 157376595 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0462] Phosphoribosylpyrophosphate synthetase |
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| TIGRFAM ID | [TIGR01251] ribose-phosphate pyrophosphokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.281933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.770216 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGCCTGACA TTAAACTTTT TGCTGGTAAC GCTACACCTA GTCTCGCTAA GAAGATAGCC
GATCGTCTAT TTTGTAAACT TGGAGACGCA GCCGTTGGCG TTTTCAGTGA CGGCGAAATC
AGTGTCCAGA TAAACGAGAA TGTACGTGGT GCGGATGTCT TTATCATTCA ATCTACTTGT
GCACCAACTA ACGACAACCT AATGGAACTT ATCGTTATGG TTGATGCGTT ACGTCGTGCC
TCTGCAGGAC GTATCACTGC AGTTATCCCT TACTTTGGCT ATGCTCGCCA AGATCGTCGT
GTTCGCAGTG CTCGTGTACC TATTACCGCT AAAGTCGTTG CCGACTTTTT GTCTAGCGTA
GGTGTTGACC GTGTATTGAC TTGTGACCTA CACGCCGAGC AGATCCAGGG GTTCTTCGAT
GTACCTGTAG ATAACGTATT TGGTAGCCCT GTGTTACTGG AAGATATGTT AGCTAAGAAT
CTTGAAAACC CGGTTGTGGT TTCTCCTGAT ATCGGCGGCG TTGTTCGTGC ACGTGCCGTA
GCTAAACTAC TCGACGATTC AGATCTGGCC ATTATCGATA AGCGTCGCCC ACAAGCGAAC
GTGGCTCAGG TCATGCACAT CATCGGTGAT GTTCAGGGAC GTGACTGCAT CATCGTTGAC
GATATGATCG ATACCGGCGG TACGCTTTGT AAAGCAGCTG AAGCATTGAA AGAACATGGT
GCAAACCGCG TATTTGCTTA TGCGACTCAC CCAGTATTCT CAGGCAATGC AGCTAAGAAC
ATCGCTGAAT CTGTTATCGA TGAAGTGATT GTCACCGATA CGATTCCATT GAGCCCTGAA
ATTGCAGCAC TCGATAAGGT TTCTCAATTG ACTATGTCGT CTGTAATGGC TGAAGCGATT
CGTCGCGTTA GCAATGAAGA GTCTATCTCT GCGATGTTCA AGCATTAA
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| Protein sequence | MPDIKLFAGN ATPSLAKKIA DRLFCKLGDA AVGVFSDGEI SVQINENVRG ADVFIIQSTC
APTNDNLMEL IVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV
GVDRVLTCDL HAEQIQGFFD VPVDNVFGSP VLLEDMLAKN LENPVVVSPD IGGVVRARAV
AKLLDDSDLA IIDKRRPQAN VAQVMHIIGD VQGRDCIIVD DMIDTGGTLC KAAEALKEHG
ANRVFAYATH PVFSGNAAKN IAESVIDEVI VTDTIPLSPE IAALDKVSQL TMSSVMAEAI
RRVSNEESIS AMFKH
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