| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3428 |
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| Symbol | |
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| ID | 5613579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4178971 |
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| End bp | 4179603 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934368 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit D |
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| Protein accession | YP_001475160 |
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| Protein GI | 157376560 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
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| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.126188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTAACG CTAAAGAACT TAAGGAGGTC CTGTCGGGGC CAATAGTGAG TAACAACCCG
ATTGCCTTGC AGGTATTGGG TGTATGTAGT GCACTTGCTG TAACCAGTAA GTTGGAAACT
GCATTGGTTA TGACGATTGC ATTAACTGCC GTTTGTGCTT TCTCTAACTT GTTTATCTCA
ATGCTACGTA ACCATATCCC CAGCAGTGTG CGTATTATCG TACAGATGAC TGTGATTGCA
TCTTTGGTAA TTGTGGTAGA CCAGGTGCTA CAGGCTTATG CCTACGATGT GGCTAAGCAG
CTTTCGGTAT TTGTTGGTTT GATTATCACT AACTGTATCG TAATGGGGCG CGCCGAAGCT
TATGCGATGA AAACGCCGCC CATGATGAGC TTTATGGATG GTATAGGTAA CGGTATCGGC
TACGGTGCTA TCTTGCTGTC AGTTGGTTTT GTCCGTGAAC TCTTTGGTAA TGGTTCGCTA
TTTGGTGTCG AGATCTTAAG CAAGATTTCA GATGGTGGCT GGTATCAGCC AAACGGTCTG
TTATTGCTAC CACCGAGTGC GTTCTTCTTA ATCGGTACGT TGATCTGGAT CATCCGTACT
ATTAAGCCAG AGCAAGTTGA AGCAAAAGGG TAA
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| Protein sequence | MANAKELKEV LSGPIVSNNP IALQVLGVCS ALAVTSKLET ALVMTIALTA VCAFSNLFIS
MLRNHIPSSV RIIVQMTVIA SLVIVVDQVL QAYAYDVAKQ LSVFVGLIIT NCIVMGRAEA
YAMKTPPMMS FMDGIGNGIG YGAILLSVGF VRELFGNGSL FGVEILSKIS DGGWYQPNGL
LLLPPSAFFL IGTLIWIIRT IKPEQVEAKG
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