| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3408 |
|---|
| Symbol | |
|---|
| ID | 5609761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4154037 |
|---|
| End bp | 4155173 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934348 |
|---|
| Product | chaperone protein DnaJ |
|---|
| Protein accession | YP_001475140 |
|---|
| Protein GI | 157376540 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | [TIGR02349] chaperone protein DnaJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.4894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00217472 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAGC GAGATTATTA CGAAGTATTA AGCGTCAGCC GTGACGCCAG CGAACGTGAA
ATTAAAAAGG CTTACAAACG TTTAGCCATG AAATTTCACC CTGATCGTAA CCCAGGTGAT
AAGCAGGCGG AAGCCAACTT TAAAGAGGTG AAAGAAGCCT ACGAAATCCT GACGGACGCG
GATAAAAAAG CGGCCTATGA TCAGTTTGGT CATGCTGGTG TCGATCCTAA CCGCGGTGGC
GGTGGTTTTG GTGGCAATGC CGATTTCGGT GATGTCTTTG GCGATGTCTT CGGTGATATC
TTCGGTGGTG GACGCCGTGG TGGCGGTCAA CGTCAAGCTG CCCGTGGTAG CGACTTGCGT
TATAACCTTG AGCTGTCTCT CGAAGAGGCG GTTAAAGGTT TAACTAAAGA GCTGCGTATT
CCTACACTGG CAGCGTGTGA TTCCTGTGAT GGTAGCGGTG CTAAGAAAGG CACATCGCCG
ACTACCTGTG GAACTTGTCA TGGCCAAGGC CAGGTTCAGA TGCGTCAGGG TTTCTTTGCT
GTTCAGCAGG CCTGTCCGAC GTGTCATGGT CGCGGTAAGA TCATTAAAGA TCCGTGCAAC
AAGTGTCATG GTGAAGGTCG CGTTGAGAAG AGCAAAACCT TATCTGTTAA GATCCCAGCT
GGTGTCGATA ACGGCGATCG TATCCGCCTC TCTGGTGAAG GTGAAGCGGG CGAGTTCGGG
GCACCTCCAG GCGATCTGTA TGTACAGGTA AGCGTGCGCG AACATACTAT TTTCGTACGT
GATGGTAATA ATCTGTATTG CGAAGTGCCT ATTTCGTTCA GTAAAGCTGC TCTTGGCGGT
GAAATTGAAG TACCTACCTT AGATGGTAAG GTTAACCTTA AGATCCCTGC TGAGACACAA
ACGGGTCGTA TGTTCCGTAT GCGAGGTAAG GGCGTTAAGT CTGTACGTAG CCATGCGGTC
GGTGACTTGC TGTGTAAGGT TGTGATGGAG ACGCCTGTTA AGCTAAACGA GCGTCAAAAA
GAACTACTGC GTGAATTCGA TGAGACCTTA ACCGGTTCAT CATCTAAGAA ACATAGCCCT
AAGGCTGAAG GTTTCTTCGA TGGCGTGAAG AAGTTCTTTC AGGACCTGAA TAGCTAA
|
|---|
| Protein sequence | MSKRDYYEVL SVSRDASERE IKKAYKRLAM KFHPDRNPGD KQAEANFKEV KEAYEILTDA
DKKAAYDQFG HAGVDPNRGG GGFGGNADFG DVFGDVFGDI FGGGRRGGGQ RQAARGSDLR
YNLELSLEEA VKGLTKELRI PTLAACDSCD GSGAKKGTSP TTCGTCHGQG QVQMRQGFFA
VQQACPTCHG RGKIIKDPCN KCHGEGRVEK SKTLSVKIPA GVDNGDRIRL SGEGEAGEFG
APPGDLYVQV SVREHTIFVR DGNNLYCEVP ISFSKAALGG EIEVPTLDGK VNLKIPAETQ
TGRMFRMRGK GVKSVRSHAV GDLLCKVVME TPVKLNERQK ELLREFDETL TGSSSKKHSP
KAEGFFDGVK KFFQDLNS
|
|---|
| |