| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3406 |
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| Symbol | |
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| ID | 5609759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4152232 |
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| End bp | 4152849 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934346 |
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| Product | peptidylprolyl isomerase, FKBP-type |
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| Protein accession | YP_001475138 |
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| Protein GI | 157376538 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00378668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000207363 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGACA AGTTCACTAC TATTGAAGAG CAAGCAAGTT ACGGTGTAGG CCGTCAACTA
GGCGAGCAAT TAGCTGCCAA CTCATTCGAA GGTATCAATA TCTCAGCTGT ACAGCTAGGT
CTTTCAGATG CATTTGATGG CATAGAAAGC CAAGTCGCTA TGCAAGATCT TCAAGTTGCT
TTTACTGAGA TCAGTCAGCG TATTCAGAAA GTTCAAGAAG CTGCTGCAGA AGCTGCGTCA
GCTGAAGGTG AAACTTTCCT TGCAGAAAAT GCCAAGCGTG ATGGAGTTCA GACTCTGGAA
TCTGGCCTAC AGTATGAAGT TATCACTGAA GGTAGTGGTG ATAAGCCTGG TCTTGATTCA
ACAGTTCGTA CTCATTACCA CGGTACTTTC ATCAATGGTG ATGTATTCGA TAGCTCTGTT
ATTCGTGATC AGCCTGCTGA ATTCCCAGTA TCGGGTGTTA TCGCTGGTTG GACTGAAGCA
TTACAGCTTA TGCCTGTAGG TACTAAGTGG AAGTTATATG TTCCTCATCA CTTAGCTTAC
GGCGAGCGAG GTGCTGGCGC ATCTATCCCG CCATATTCGG CTCTCGTATT TGAAGTTGAA
TTGCTCGACA TTCTGTAA
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| Protein sequence | MSDKFTTIEE QASYGVGRQL GEQLAANSFE GINISAVQLG LSDAFDGIES QVAMQDLQVA
FTEISQRIQK VQEAAAEAAS AEGETFLAEN AKRDGVQTLE SGLQYEVITE GSGDKPGLDS
TVRTHYHGTF INGDVFDSSV IRDQPAEFPV SGVIAGWTEA LQLMPVGTKW KLYVPHHLAY
GERGAGASIP PYSALVFEVE LLDIL
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