Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3403 |
Symbol | carB |
ID | 5609604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4146731 |
End bp | 4149949 |
Gene Length | 3219 bp |
Protein Length | 1072 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934343 |
Product | carbamoyl phosphate synthase large subunit |
Protein accession | YP_001475135 |
Protein GI | 157376535 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000056188 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCAAAAC GTACAGATAT AAAAAGTATT CTTATCCTGG GTGCTGGCCC GATTGTTATC GGACAAGCAT GTGAGTTTGA TTACTCTGGT GCCCAGGCTT GTAAAGCGCT GCGTGAAGAA GGTTACCGGG TCATCCTCGT TAACTCTAAT CCTGCAACTA TTATGACCGA TCCAGAGATG GCCGATGCGA CTTATATCGA GCCAATTCAC TGGGAAGTTG TTCGTAACAT TATTGCCAAA GAACGCCCCG ATGCGATTCT TCCGACTATG GGCGGTCAGA CGGCACTTAA CTGTGCTCTT GAGCTAGAGA GCAAAGGCGT CCTCGAAGAG TTTAATGTTG AGATGATCGG TGCGACTGCC GATGCGATTG ATAAAGCTGA AGATCGTAGT CGTTTCGATA AGGCAATGAA AGCAATTGGC CTCGAGTGTC CTCGTGCCGG TATTGCCCAT ACATTGGATG AGGCCAACGC CGTAGTGGCA GAGCTTGGCT TCCCTTGTAT TATCCGCCCG TCATTCACCA TGGGTGGCAG TGGTGGTGGT ATCGCCTACA ACAAAGAGGA GTTCGAGGAG ATCTGTTCTC AGGGTCTTGA ACTTTCACCG ACGAGCGAAC TGCTTATCGA TGAATCTTTG ATTGGTTGGA AAGAGTATGA GATGGAAGTG GTACGTGATC GCAATGACAA TTGCATCATC GTCTGTGCTA TCGAAAACTT TGATCCTATG GGCGTTCATA CCGGTGACTC TATTACGGTC GCCCCCGCAC AAACCCTAAC TGATAAAGAG TATCAGTTGA TGCGTAATGC ATCACTTGCT GTACTGCGTG AGATTGGTGT TGAGACCGGT GGGTCAAACG TACAGTTTGG TATTAACCCT GTTGATGGCC GTATGGTTAT CATCGAGATG AACCCGCGTG TATCACGTTC ATCTGCACTC GCGTCTAAAG CGACGGGTTT CCCAATCGCT AAAATTGCGG CAAAACTGGC TGTTGGTTTC ACCTTAGATG AGCTTAAAAA TGACATCACA GGTGGCAACA CACCAGCATC ATTTGAGCCT GCAATCGATT ACGTAGTGAC TAAATTACCA CGCTTTAACT TTGAGAAGTT TGCCGGTGCG AATGACCGCC TCACGACTCA GATGAAGTCA GTGGGTGAAG TGATGGCCAT TGGCCGTACT TTCCAGGAAT CACTTCAAAA AGCCCTTCGT GGTCTTGAAG TTAGCAAAAA TGGTTTAGAC CCGATAATCG ATATCGATGA ACCAGAAGCT ATGGCGCGTA TTCGTCATGA ACTTCAAGAG CCGGGTGCCG AGCGTATCTG GTATATCGCA GACGCATTTC GCGCCGGATT AACCGTCGAT GATATCTTTG GTTTAACGAA GATTGACCCT TGGTTCTTAG TACAGATGCA AGATCTGCTT CAACTTGAAT CTGAAGTGAA AGAATCGGGC ATGTCTGGCA TGAACGAGAC ATTCCTTCGC CAGTTAAAGC GTAAAGGTTT CTCTGATATT CGTCTTTCAC TTTTATTGGG TGTTAGTGAA TCTGAGATGC GAAAATTGCG TCACAGACAT GAGATATTCC CAGTCTACAA GCGCGTCGAT ACCTGTGCTG CCGAATTTTC AACTGATACG GCTTACATGT ACTCTACCTA TGAAGAGGAG TGTGAGGCAG CACCGTCAAA TCGTGACAAG ATCATGATAT TAGGTGGTGG GCCAAACAGA ATTGGTCAAG GTATCGAGTT TGATTACTGT TGTGTTCATG CGGCGTTAGC GCTGCGTGAA GATGGTTACG AAACCATCAT GGTTAACTGT AACCCTGAGA CTGTATCGAC CGATTACGAC ACTTCAGACA GACTCTATTT TGAGCCTGTT ACCCTTGAAG ATGTGCTGGA GATCGTCCGT ATTGAAAAGC CGAAAGGTGT TATCGTTCAA TACGGTGGTC AGACGCCGCT TAAGCTGGCT CGTGAACTCG AAGCCGCGGG TGTGCCTATT ATCGGTACCA GCCCGGATGC GATTGACCGC GCCGAAGATC GTGAGCGTTT CCAACAGGCG ATTCAGCGTC TAGAGATGAA GCAGCCTGAA AATGACACGG TTACCACTGT TGAAAGAGCT GTGATTTCTG CCGAGCGTAT CGGTTACCCA TTAGTGGTTC GCCCATCTTA TGTACTGGGT GGCCGCGCGA TGGAAATTGT TTATGATGAG CAGGACTTGC GTCGTTACTT CAACGAAGCG GTTAGCGTGT CAAATGCATC GCCTGTACTA CTGGACCGCT TCCTGGATAA TGCGATTGAG ATCGATATCG ATGCTGTCTG CGACGGTGAA ACCGTTGTTG TCGGTTCTAT CATGGAACAT ATCGAGCAAG CGGGTGTTCA CTCGGGTGAC TCAGGATGTT CACTACCGCC CTATAGCTTA AGCGACGATA TTCAAAATCG TATGCGCGAG CAGGTTGGTA AGCTAGCGAT GGAACTGGGC GTTATCGGTT TGATGAATGT CCAGTTTGCG GTGAAGGATG ATGAGATCTA CATGATCGAA GTTAATCCAC GCGCAGCGCG TACCGTGCCA TTTGTCTCTA AAGCTACGGG CGTGCCTTTA GCTAAGATTG CGGCGCGAGT GATGGCAGGT CAAAGCCTAA AGTCACAGAA CTTCACCAAG GAAGTTATCC CACCCTATTA CTCTGTTAAA GAGGTGGTAT TACCTTTCAA TAAGTTCCCG GGTGTGGATC CTCTGCTTGG CCCTGAAATG CGCTCAACTG GTGAAGTGAT GGGGGTCGGT GAAACGTTTG CCGAAGCCTA TGCAAAGGCT CAACTCGGTG CCACCAGCGA AGTCCCTAAG TCTGGCCGCG CGTTATTGTC TGTTCGTAAC AGTGATAAGG CACGTGTTGT TGATTTAGCG GCTAAGTTAA TTGGCTTAGG TTATGAGATC GATGCGACTC ATGGTACCGC GGTTGTACTA GGTGAAGCGG GTATCAATCC TCGTTTGGTA AACAAGGTAC ATGAAGGTCG TCCACACATT CTTGACCGTA TAAAGAATGA TGAGTACACC TACATAGTTA ACACAACCGA GGGGCGTCAG GCGATTGAAG ACTCACGCCA GTTGCGTCGT GGTGCCTTGA GATACAAGGT TAACTACACG ACAACCTTGA ATGCTGCATT TGCGACCTGT ATGGCTCACT CGGCAGATGA TCGTAGTAAT GTAAACTCTG TGCAAGAATT GCATAGTAAA ATTAAGTGA
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Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELESKGVLEE FNVEMIGATA DAIDKAEDRS RFDKAMKAIG LECPRAGIAH TLDEANAVVA ELGFPCIIRP SFTMGGSGGG IAYNKEEFEE ICSQGLELSP TSELLIDESL IGWKEYEMEV VRDRNDNCII VCAIENFDPM GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP VDGRMVIIEM NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELKNDIT GGNTPASFEP AIDYVVTKLP RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVSKNGLD PIIDIDEPEA MARIRHELQE PGAERIWYIA DAFRAGLTVD DIFGLTKIDP WFLVQMQDLL QLESEVKESG MSGMNETFLR QLKRKGFSDI RLSLLLGVSE SEMRKLRHRH EIFPVYKRVD TCAAEFSTDT AYMYSTYEEE CEAAPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RELEAAGVPI IGTSPDAIDR AEDRERFQQA IQRLEMKQPE NDTVTTVERA VISAERIGYP LVVRPSYVLG GRAMEIVYDE QDLRRYFNEA VSVSNASPVL LDRFLDNAIE IDIDAVCDGE TVVVGSIMEH IEQAGVHSGD SGCSLPPYSL SDDIQNRMRE QVGKLAMELG VIGLMNVQFA VKDDEIYMIE VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKSQNFTK EVIPPYYSVK EVVLPFNKFP GVDPLLGPEM RSTGEVMGVG ETFAEAYAKA QLGATSEVPK SGRALLSVRN SDKARVVDLA AKLIGLGYEI DATHGTAVVL GEAGINPRLV NKVHEGRPHI LDRIKNDEYT YIVNTTEGRQ AIEDSRQLRR GALRYKVNYT TTLNAAFATC MAHSADDRSN VNSVQELHSK IK
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