| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3383 |
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| Symbol | |
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| ID | 5610352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4121933 |
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| End bp | 4122841 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934321 |
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| Product | lipoprotein NlpI |
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| Protein accession | YP_001475115 |
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| Protein GI | 157376515 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0016605 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00207102 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCAAA AGATGCGGAC AGTCGCAGTA GTGTTTTTGG CTGGTATGAG TATTTTGCTA
ACAGGATGTG TCTCAACTCA GTCTGGCGCG AATGAGCAGG GCAAGGTCAT GGTTGAACCT
GTGATGCCTG ATTATAAGCT TGAAATCACC TTAGCTAAAT TAAATGAAAT TTTGTCATCC
GCCGAGTTAA CCGATGAGCA GAGAGCCAGG TTTCACTATG ACCGCGGCGT TATCTATGAC
AGCGTCGGGC TGCGTATTTT GAGTCGAATA GATTTTCATC AGGCGTTGAA ATTACAACCT
AACCTTGCCG ATGCTTACAA CTTCATTGGA ATTTATTATA CTCAGGAAGG TGAATTTGAA
AGTGCCTATG AAGCGTTCGA TGCGGTTTTA GAGCTTTCTC CTGATTACGA TTACGCCTTT
CTTAACCGTG GTATCGCCCT GTATTACGGT GAACGCAACA TGCTTGCCGT ATCAGATATG
GAGTCTTTCT ACTCCCTGGA TCAAAAAGAT GGCTATCGCG CACTTTGGCT CTACCTGACC
GAAAGTGAGA TAAGCGTTGA ACAGGCTAAA ATAAGACTCG AATATAACCG AACTCAACTG
GCGCCAAATG CCTGGTCTAA TGAATTGGTT GATTTCTATT TAGGGAAAAA GAGTCGGGAA
CAGGTTTTCG CGGCCGCTAA AGAGGGGCTT TCTCATCCCA ATGAGTACGC CGAACGCCTT
TGCGAAGCCT ATTTCTATAT CGCCAAAATT GCCCAGCAGC AGGGAAACAA CAGTGATGCG
GCAAATTATT TCAGGCTCGC ATTAGCAACC AATATCTATG ATTTTGTCGA ACATAGATAT
GCCAGAATAG AGCTGGCTAA AATTAATGCC AAACTTTATG CCGAAGAGTC AGCCAAGAAC
CCTCATTAA
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| Protein sequence | MIQKMRTVAV VFLAGMSILL TGCVSTQSGA NEQGKVMVEP VMPDYKLEIT LAKLNEILSS
AELTDEQRAR FHYDRGVIYD SVGLRILSRI DFHQALKLQP NLADAYNFIG IYYTQEGEFE
SAYEAFDAVL ELSPDYDYAF LNRGIALYYG ERNMLAVSDM ESFYSLDQKD GYRALWLYLT
ESEISVEQAK IRLEYNRTQL APNAWSNELV DFYLGKKSRE QVFAAAKEGL SHPNEYAERL
CEAYFYIAKI AQQQGNNSDA ANYFRLALAT NIYDFVEHRY ARIELAKINA KLYAEESAKN
PH
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