| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3359 |
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| Symbol | |
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| ID | 5609831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4086441 |
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| End bp | 4087619 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934297 |
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| Product | trimethylamine-N-oxide reductase C-type cytochrome TorC |
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| Protein accession | YP_001475091 |
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| Protein GI | 157376491 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
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| TIGRFAM ID | [TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTGGT TTATCAATAT TTGGCGCACA CTCAACAAGC CAGCCAAATT CCTCACCTTA
GGTACGGTCA GTCTATCTGC CTTCCTGATG GGCATCATCT TCTGGGGTGG TTTCAATACC
GCACTCGAGA TGACCAATAC CGAAGAGTTT TGTATTAGCT GCCACAGTAT GGAGAGCAAG
CCATACCAAG AGCTACAGGA GACCGTTCAC TGGTCAAATC ATTCCGGCGT TCGCGCGACG
TGTCCGGATT GTCACGTACC ACACAACTGG AGCCGCAAGA TAGGTCGCAA AATTGAAGCG
TCCCATGATA TGTGGGGCTG GTTACTGCAA ACCGTCAATA CCAGTGAAAA GTTCGAAGCT
AAACGCCTGG AGATGGCGAG CCGCGAATGG AAACGTTTCG ACCGTGATAA CTCGCTTGCC
TGTAAAAACT GCCACAACTA CGACTCGATG AAATGGGACA GCATGTCCAA GCTCGCACAG
AAGCAGATGA AACGAGCGGC AGAGCTGGAT CAAAGCTGTA TCGATTGTCA TAAGGGTATC
GCTCATAAAC TGCCTGACAT GGGCACCTCT CGTGCACCTG AACTGATCGC GCAGGTAGGA
TCAGGCGAAA GTGCGCCACA GAGTGAACAA ACCTACTTCA CAGCACTAAC CAAGCCACTT
TTCTATAACG ATAAAACGGA TGTAGAAGCC GGCACCCTGA ATATAGCAAC CAAGGTCAAA
GTATTAGAGA CCAAGGGTAA TCGCGTAAAG ATCGGTATCG ATGGCTGGCG TAAGAAGATT
GGTGCGGGCC GCGTGATCTA CTATGACTTC GGTCTCAACA TTCTCTCAGC ACAACTGACT
AAAGATGCGG CTCTGGAAGA GGGTGTCATC GAAACCTTCG AAGAGAAGGA AGATCCGATG
ACAGGCCTAA AATGGCAACG CGTCGAAGCA CAAATCTGGA CAGATAAAGA CTACCTGGTG
AGTGACCTGC AACCACTTTG GGACTACGCA CGTGACACAT ATACCACCAG CTGTAGCGTA
TGTCATACGC AGCCGGATGA AGCGCACTTC GATGCCAACA CCTGGCCGGG TATGTTCCAG
GGCATGATCG CGTTCGTCAA TATGGACCAA GATACCCAGG CGCTGGTTCA AAAATACCTG
CAAGAGCATT CATCGACGTT TGTCAAAACA TCGCACTAA
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| Protein sequence | MKWFINIWRT LNKPAKFLTL GTVSLSAFLM GIIFWGGFNT ALEMTNTEEF CISCHSMESK
PYQELQETVH WSNHSGVRAT CPDCHVPHNW SRKIGRKIEA SHDMWGWLLQ TVNTSEKFEA
KRLEMASREW KRFDRDNSLA CKNCHNYDSM KWDSMSKLAQ KQMKRAAELD QSCIDCHKGI
AHKLPDMGTS RAPELIAQVG SGESAPQSEQ TYFTALTKPL FYNDKTDVEA GTLNIATKVK
VLETKGNRVK IGIDGWRKKI GAGRVIYYDF GLNILSAQLT KDAALEEGVI ETFEEKEDPM
TGLKWQRVEA QIWTDKDYLV SDLQPLWDYA RDTYTTSCSV CHTQPDEAHF DANTWPGMFQ
GMIAFVNMDQ DTQALVQKYL QEHSSTFVKT SH
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