| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3350 |
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| Symbol | |
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| ID | 5610393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4074834 |
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| End bp | 4075835 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934288 |
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| Product | peptidase U32 |
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| Protein accession | YP_001475082 |
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| Protein GI | 157376482 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGC TGTGTCCAGC AGGTAACCTG GCATCACTAA AAACGGCATT GAATGCCGGT
GCCGATGCCG TCTACTTGGG CTTAAAGGAT GATACCAACG CCAGATCATT CGCGGGACTG
AACTTTACCC CGAAAAAGCT ACGAGAAGCG GTACAATTTA CCAAGAAGCA GGGTAAAAAG
ATCTTCCTCA CCATCAATAC ATTTCCAAAA CCGGGTGAGG AGAAGCGTTG GTATGAAGCG
GTAGATATTG CAGCCAATAC GGGGATCGAT GCCTTGATTG TGGCAGACTT GTCACTGCTC
GATTACGCTC ATAGCCGCTA CCCGCACCTG CCTCTTCATC TATCGGTCCA GGCCAGCGCG
ACCAACCTGG GCGCATTGCA GCTCTATAAA GAGGAGTTCA ATATCGAGCG CGCCGTTTTA
CCACGAGTGC TTTCGATGAA ACAGGTGAGA GATCTTGCTA AAGTCACGCC GGTTGATCTT
GAGGTGTTCG CCTTTGGTAG CCTGTGCATC ATGGCCGAAG GACGCTGTCA TCTTTCATCT
TACGTCACGG GTCAGTCCCC GAATACCGGC GGGTCTTGCT CCCCGGCAAA ACATGTACGT
TGGCAGGAAG AGGGACAAGA CAGATTAACT CGTCTTAACG AGGTATTAAT CGATAAGTCA
GGCATTGATG AACAGATGGG TTACCCCGTC GTCTGTAAGG GGCGCTACAT CACAGAAGGT
GACAACGCTC CATCACACCT GCTCGAGTCG CCAACCAGCC TTAATACCCT GAGCCTACTG
CCAGAATTGG CCAAAGCAAA TGTCGTATCG TTAAAAATCG AAGGCAGACA ACGTAGCCCG
GCCTATGTAG AGCAGGTTAC GAAAGTATGG CGCAACGCCA TAGATACCTA TCTCAGAGAC
CCACAAAATT ATCAAACGCA AGCAGAGTGG GACAGAGCAC TCTCTAAAGT ATCCGAAGGG
CAGACCACAA CATTGGGTGC CTATGAGCGT ACCTGGCAGT GA
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| Protein sequence | MELLCPAGNL ASLKTALNAG ADAVYLGLKD DTNARSFAGL NFTPKKLREA VQFTKKQGKK
IFLTINTFPK PGEEKRWYEA VDIAANTGID ALIVADLSLL DYAHSRYPHL PLHLSVQASA
TNLGALQLYK EEFNIERAVL PRVLSMKQVR DLAKVTPVDL EVFAFGSLCI MAEGRCHLSS
YVTGQSPNTG GSCSPAKHVR WQEEGQDRLT RLNEVLIDKS GIDEQMGYPV VCKGRYITEG
DNAPSHLLES PTSLNTLSLL PELAKANVVS LKIEGRQRSP AYVEQVTKVW RNAIDTYLRD
PQNYQTQAEW DRALSKVSEG QTTTLGAYER TWQ
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