| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3340 |
|---|
| Symbol | |
|---|
| ID | 5609797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4060294 |
|---|
| End bp | 4061796 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640934278 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001475072 |
|---|
| Protein GI | 157376472 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAGCG ACTGGTATAT CTGGTTTTTA CTCATTTTAT CTGTCGCTGG TATCATCTAT
TGGTACCGGC ATAAAAAAGG TGACACTGAG TTCATTCAAG CTTTAGTACA ATACCTGAAA
AGGCCTCACG GCTATCATCA GTTGCATGTT TCAGAGGTTC CCACAAAATA CATTCAGCTT
TATCAAGCAT TACAATACTT TATTGCAACC CTTCCTCTTC CGAGTGATAA AGATAAGTTA
ACTGGTTTTT CTAACCGTTT AGGACTGAAA TCAAAACTTA TGAGTCTGAT GCCATTAACA
CAGGGAACCT TAGTGTTAAT CGATGTCTAT CGCTTTCGGT TCGTCAATGA TCTGTTTGGC
TTCTCTGTCG GTGATAAATT ACTCCTCTCA CTATCAAAGC GCCTCACCGC TCTCGATGAA
GAGGTGACGT TTCTGGCTCG CATGAACGAA GATGAGTTTT TGCTTTATTT TGACAGTGCC
CAAGCGGAAG ATACACTGCT TTCTATCCGT CACGAGTTAC AAGTTCCTTT TGAGATAGAT
GATACCCCGA TAACGGTTCA AATTCAGATG GGCTATCTGG ATTTGGAGCA ACATCATACA
GATATGAGTC AGCTCTTAAG ACGGCTGGAT CTTGCCCTTA TTAAAGCCAA ACAAGATAAA
TATTTCTTCG CCAGCTATGT TAAAGGTGAC GATGTCAGTC AACACCGCCA GCTCAGTATC
ATTAACCGAC TTCCTAAGGC CTTAGCGTTA GGGGAGTTGT ATATGGTTTA CCAACCAAAA
CTAACTCTAT CTGATGGGCG ATGTGTACAG GTGGAGGCGT TAATGCGCTG GGAGCACCAT
CAATTAGGCG TGTTATCGCC GGCTGAATTT ATTCCGCTTG TAGAGTGTGC CGGGATGATA
AAGGTTGTGA GCCAGTGGGC GCTGGATCAG GTTATCTCTC AACAGGCCAA ATGGAAGCAG
TCGGGCTTAC ATCTGCAAGT CGCGGTGAAT CTTTCTACTC AAGATCTTAT CAGCGGCACA
CTATGTGATG ATATTCAGGC TAAGTTACAC CGACATAAGG TCGATGCCAG TGCACTTTCC
ATTGAGATAA CCGAGAGCAC ACTGATGGAC GACATGGAGA CTGCGGTTCA AACGATTAAG
AGATTGAAGC AGGTTGGTGT TGACGTTGCT ATCGATGATT TCGGTACGGG TCACTCTTCT
CTGGCTTATT TGAAAAACTT TCCCGTGGAT GAGGTGAAAA TTGATAAGGC GTTTATCGAT
GACCTGTTAG TCGACTCTCG TGCATTACAC ATCATGAAAT GCAGCATTGA GTTGGCAAAG
GGGCTTGCCT TTAAGGTGAC GGTTGAGGGA GTTGAAACCG AGGAGATATA TTTGGCATTG
ACGAATATGG GGGTCGATAA AATTCAAGGC GATCTCTTCG CGAAGCCGAT GAGTGCCAAG
GAGCTCGAAG AGAGTTGGGG ACTGCTTCAG CAGAGCTGTC TGCCCCGGAT AAGCGAGCGT
TAA
|
|---|
| Protein sequence | MESDWYIWFL LILSVAGIIY WYRHKKGDTE FIQALVQYLK RPHGYHQLHV SEVPTKYIQL
YQALQYFIAT LPLPSDKDKL TGFSNRLGLK SKLMSLMPLT QGTLVLIDVY RFRFVNDLFG
FSVGDKLLLS LSKRLTALDE EVTFLARMNE DEFLLYFDSA QAEDTLLSIR HELQVPFEID
DTPITVQIQM GYLDLEQHHT DMSQLLRRLD LALIKAKQDK YFFASYVKGD DVSQHRQLSI
INRLPKALAL GELYMVYQPK LTLSDGRCVQ VEALMRWEHH QLGVLSPAEF IPLVECAGMI
KVVSQWALDQ VISQQAKWKQ SGLHLQVAVN LSTQDLISGT LCDDIQAKLH RHKVDASALS
IEITESTLMD DMETAVQTIK RLKQVGVDVA IDDFGTGHSS LAYLKNFPVD EVKIDKAFID
DLLVDSRALH IMKCSIELAK GLAFKVTVEG VETEEIYLAL TNMGVDKIQG DLFAKPMSAK
ELEESWGLLQ QSCLPRISER
|
|---|
| |