Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3338 |
Symbol | |
ID | 5609795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4058895 |
End bp | 4059677 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934276 |
Product | amino acid ABC transporter |
Protein accession | YP_001475070 |
Protein GI | 157376470 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCAAACC TCAACCTACT CCCGCGAGCA CTTTCACTAC TATTGTGTCT CATCAGCTAT AATCTTGCCG CCGATGACAT GGCTAAGACC ATCAAGTTAG CCGCCGAAGA CAATTGGGCT CCTTATGCCG AATCCTCCGG AAGCGGACTT TCCCACTCTC TGATCAATTC TGCCTTCTCG CGTGTTGGCA TCGAAGTCGA CAGCATTGTT GTTCCCTATG CTCGCGCCGT TGTTATGGCC AAAAAGGGGA TAGTCGACGG TGTTTTTAAC TTAATAAAAG AGAAAAGCAC TCAAGATCAG TTTATCTTCG GCAAGCAAGC TCTTTTTTCC GCCACTGCAT CATTTTATCA AAACAAGCAG TCTCCACTTA ACGTGGAAAG CAAATGGCTG CTCCCCAAAA ATACCAGAGT CGGCGTCATT GATGGCTATG AGTACGGAGA TGAATTATCA GAATTGCCAA ACATACAGGT CATTAAGCTA TCGAATCACA ACCAACTGAT TAACTTGCTG CTATTAAATA GAATAGATAC TGCGATCATG TATGATCTGG TTGCCGAACA GTATATAGCA CGGATGCGGG TTTCATCTGA GATCGGTTCG ACATTCATAA ACCATACCGG GCAAGTTTAT CTCGCATTCT CCAAGAAGAA CCCCGAGGCA GAACACTTAG CTGAGATGCT GGACACAGGA TTAACAGCCC TAAAACATGA TGGCAGTTAC CAGCAAATTA TGACTTCCAG CCTCGAAACG GCTCATCATT CGAATGGGAA GTTAAAGCCT TAG
|
Protein sequence | MPNLNLLPRA LSLLLCLISY NLAADDMAKT IKLAAEDNWA PYAESSGSGL SHSLINSAFS RVGIEVDSIV VPYARAVVMA KKGIVDGVFN LIKEKSTQDQ FIFGKQALFS ATASFYQNKQ SPLNVESKWL LPKNTRVGVI DGYEYGDELS ELPNIQVIKL SNHNQLINLL LLNRIDTAIM YDLVAEQYIA RMRVSSEIGS TFINHTGQVY LAFSKKNPEA EHLAEMLDTG LTALKHDGSY QQIMTSSLET AHHSNGKLKP
|
| |