| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3324 |
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| Symbol | |
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| ID | 5610563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4040090 |
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| End bp | 4041544 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934262 |
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| Product | thiamine biosynthesis protein ThiI |
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| Protein accession | YP_001475056 |
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| Protein GI | 157376456 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0301] Thiamine biosynthesis ATP pyrophosphatase |
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| TIGRFAM ID | [TIGR00342] thiazole biosynthesis/tRNA modification protein ThiI |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.146842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTTA TCGTAAAACT ATTTCCTGAA ATCATGATGA AGAGCAAGCC GGTAAGAATG
CGTTTTACCA AGATGCTTGA AACCAATATC CGAAATGTGC TTAAAAAAGT GGATGAGTCT
GCCAAGGTTA AGCGTGAGTG GGATAAGATC ATGGTGTTGG TTCCAAGCGA TAGACCCGAC
TTGGTTGAGG CTTTTGCCGA CCGTTTATCT TGTATTCCGG GTATTGCACA CGTACTTCAA
GTCAACGAAA GCACCTTTGA ATCTGTTGAT GACATCTATC AGCAAACCTT AGCTCTGTAT
AAAGAACAAC TCGTTGGAAA GACGTTTTGT GTGCGTGTAA AGCGTGTGGG TAACCATGAC
TTTAAGTCGA TCGAAGTTGA ACGCTATGTT GGTGGTGGTT TAAATCAATT CACTGAGGCT
ACCGGTGTTA AACTAAAAAA TCCCGATATG ACCATCAACT TAGAGATAGA CAGAGAAAAT
CTCTATCTGG TTGTTAATCG TATTCAAGGG CTGGGTGGTT ACCCTATGGC GACTCAGGAA
GATGTACTGT CTCTTATCTC GGGTGGTTTT GACTCGGGCG TTTCCAGTTA CCAGTTTATT
AAACGTGGCT CCAGAACTCA CTATTGTTTC TTTAACTTAG GTGGCGATCA ACATGAGATT
GGTGTTAAGC AGGTAGCGTA TCATCTGTGG CAGAAATACG GTGAGTCTCA TAAGGTTAAG
TTTATCTCTG TGCCTTTTGA CCCGGTCGTT ACCGAGATTC TGGAGAAAAT TGATAATGGT
CAAATGGGAG TTATCCTTAA GCGTATGATG ATGCGCACGG CGGCAAGATT GGCTGACAAA
ATGGGGATCC AGGCGCTGGT AACCGGTGAA GCCATGGGGC AAGTGTCCAG CCAAACATTA
ACGAATTTGA ATGTTATCGA TCGTTGCACC GAACAGTTAA TATTACGCCC GCTGATTGCG
ATGGATAAGC AAGATATTAT TAACCTGAGT CGTAAGATAG GTACCGAAGA TTTTTCTAAA
TCGATTCCTG AATATTGTGG GGTTATCTCG CAAAAACCAA CGGTTAAAGC GGTACTTTCA
AAAATTGAAG CCGAAGAGCA AAAGTTCTCT GACGATCTTA TTGAACGTGT CCTGGAAACT
GCCGAAATCA TCGATATCAG AGAGATAGCA ACCAGCATGG ATACAAAGAT AACAGAAACT
GAAACGGTTG GTGACGTCAA CTCTAATGAA GTTATCATTG ATGTCAGAGC ACCGGAAGAG
GAGGAGAAAG ATCCTCTGAA GCTTGAAGGT ATTGAGATTA AAACGATTCC GTTTTTTAAG
CTTGCAACTC AATTTGCGGA TCTGGATAAA GCTAAAACCT ATCTGCTGTA TTGCGATCGC
GGCGTGATGA GTAAATTACA GGCCCTATAC CTGCAAGAGC AGGGTTATGA GAACGTGAAG
GTGTATCGTC CTTAA
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| Protein sequence | MKFIVKLFPE IMMKSKPVRM RFTKMLETNI RNVLKKVDES AKVKREWDKI MVLVPSDRPD
LVEAFADRLS CIPGIAHVLQ VNESTFESVD DIYQQTLALY KEQLVGKTFC VRVKRVGNHD
FKSIEVERYV GGGLNQFTEA TGVKLKNPDM TINLEIDREN LYLVVNRIQG LGGYPMATQE
DVLSLISGGF DSGVSSYQFI KRGSRTHYCF FNLGGDQHEI GVKQVAYHLW QKYGESHKVK
FISVPFDPVV TEILEKIDNG QMGVILKRMM MRTAARLADK MGIQALVTGE AMGQVSSQTL
TNLNVIDRCT EQLILRPLIA MDKQDIINLS RKIGTEDFSK SIPEYCGVIS QKPTVKAVLS
KIEAEEQKFS DDLIERVLET AEIIDIREIA TSMDTKITET ETVGDVNSNE VIIDVRAPEE
EEKDPLKLEG IEIKTIPFFK LATQFADLDK AKTYLLYCDR GVMSKLQALY LQEQGYENVK
VYRP
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