| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3303 |
|---|
| Symbol | |
|---|
| ID | 5614013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4016475 |
|---|
| End bp | 4017164 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640934241 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001475035 |
|---|
| Protein GI | 157376435 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02154] phosphate regulon transcriptional regulatory protein PhoB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000702519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000106408 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTA GGATATTAAT TGTTGAAGAT GAGTTAGCCA TCAGAGAGAT GCTAACCTTT
GTACTGGAAC AGCACGGTTT TACGACGACT GCTGCGGAAG ATTTTGATTC GGCACTAGAG
ATGCTGTCTG AGCCTTATCC TGATCTGATC CTATTAGATT GGATGTTCCC CGGGGGGAGT
GGAATTCAGC TGGCTAAGCG CTTGCGTCAG GATGAGTTCA CCCGTCAGAT CCCGATCATC
ATGTTAACGG CACGAGGTGA AGAGGAGGAT AAGGTCAGGG GACTCGAAGT GGGAGCCGAC
GATTATATAA CCAAGCCTTT CTCTCCCAAA GAGCTGGTGG CCAGAATAAA AGCGGTGATG
CGTCGCAGTT CGCCAACAAG TTTAGAGGAG CCTATCGATG TTCAGGGGCT GATGCTGGAT
CCCACCAGCC ATCGGGTGAT GGTGGATGAG CAGGTATTAG AGATGGGGCC GACCGAGTTT
AGGTTGCTGC ATTTCTTTAT GACCCATCCA GAACGTGTTT ATAGCCGAGA GCAGTTACTC
GATAATGTCT GGGGAACCAA TGTCTATGTA GAGGACAGAA CGGTAGATGT ACATATCAGA
CGGCTTCGAA AGGCTGTCGA ACCTTCGGGA CACGACCGAT TGATCCAGAC TGTCCGTGGC
GCGGGATATC GCTTCTCTAC GCGTCTCTAG
|
|---|
| Protein sequence | MTARILIVED ELAIREMLTF VLEQHGFTTT AAEDFDSALE MLSEPYPDLI LLDWMFPGGS
GIQLAKRLRQ DEFTRQIPII MLTARGEEED KVRGLEVGAD DYITKPFSPK ELVARIKAVM
RRSSPTSLEE PIDVQGLMLD PTSHRVMVDE QVLEMGPTEF RLLHFFMTHP ERVYSREQLL
DNVWGTNVYV EDRTVDVHIR RLRKAVEPSG HDRLIQTVRG AGYRFSTRL
|
|---|
| |