| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3299 |
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| Symbol | |
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| ID | 5610411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4009301 |
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| End bp | 4011094 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934237 |
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| Product | peptidase M1, membrane alanine aminopeptidase |
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| Protein accession | YP_001475031 |
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| Protein GI | 157376431 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0308] Aminopeptidase N |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00358084 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000385045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCCAAATC GATGGGATAA CAATCACGAC TATCATTCAT TCGCCAACGT AGATGAAGTC
AGAGTTCGAC ACCTTGCACT TACACTCGAT GTCGATTTTC ACTCTAAGCA GTTATCGGGT
GTTGCCGAAC TCGATCTGGA GTTTATCGAC AAATCCTGTC GTGAACTTTG GTTGGATCTG
CGCGAACTAT CGATTATTAA GGTGGTGGAT GATAATGAAG AGCTGTTAGC CTTTAACATA
GATAGAGAGG ACTCAGTCTT AGGACAGAGA CTGAATATTG CATTGAAGTC GGCAACAACT
AAGGTCAGGG TGCATTACCT TACTTCCCCC GATGCACAAG GTTTACAATG GCTGACGCCG
GAGCAAACCA GCGGTAAAAA ACTGCCATTT CTGTTTAGCC AATCTCAACC GATTAATGCA
AGAAGTTGGA TCCCACTGCA AGACAGCCCC AAGGCCCGAA TAACCTTCGA AGCCAGTGTT
ACCGTGCCAC TTGGCATGCG CGCCGTTATG AGTGCGATGA ACGATGCCGG TGCGGATTTA
GACGGGCTGT TTACCTTCTC GATGGAGAAG GCGATGCCGA CTCACCTGTT AGCGATAGCG
GTGGGAGAGC TTGCCTTTGG CAAAATTGGA GAGCGAACCG GTGTCTATGC CGAACCGGAA
GTGCTGGCCG CTGCAGTAAA AGAGTTTGAA GACACCGAGA AGATGGTTGA AATTGCCGAA
TCCTTGCTAG GGCCCTACCC CTGGGGGCGA TATGACATGA TTGTATTGCC GCCCAGTTTT
CCGTTTGGGG GGATGGAGAA CCCACGACTG GCATTCATCA CCCCGACCTT GATTGCGGGC
GATAAGAGTT TAGTGTCCAC CGTTGCCCAT GAGTTGGCAC ACTCATGGAC CGGAAACTTA
GTCAGCAACG CCACCTGGCG AGATCTCTGG CTGAACGAAG GTTTTACGAC CTACTTCACT
AACCGGATAG TCGAGGCGGT ATTCGGTAAA GAGCAGGCGG AGCTTGAAGT CGTCATAGAG
TATGGACGCT TAAAGGAGGA GCTGGCGACA ACGGCATTTG AAGCTCAAAA CCTCCCCGCG
AATGTACAGA CACAAGATCC CAATGATGCC TTCAATCGCT TTACCTATGA CAAGGCGTCA
ATGTTTGTTC ACGATCTCGA GAAACGACTA GGTAGAGAGG TATTCGATAA GTTTCTCTAT
CACTATGTTC AGCATTTCGC ATTTCAGGCG ATAACGACCG AAGTGTTTGT TGAATACGCC
AGAGATACGT TACTGATCCA ACACGCCGAT AAAATTACCG AGGCTGAGTT GTTAGAGTGG
ATCTATGGCT GTGGTATGCC TTCGTGCTTT ACACCTCCTC AATCGGATAG TCTTGATAAG
GTCGATGTTG CACTTTCAAT GTGGTTGAAA GGGGCTAGCG CCGAATCATT AGCGACGCAG
AGTTGGCGTG TACACCATTG GCAATATTTC CTGACTAGTT TGCCGGAAGT ATTACCGCAG
GCCCAGTTGA TGGAGTTAGA TGATTGCTTC AAATTAACGG CGTCTACCAA TGCTGAAATC
GCTTGTGACT GGTTCCGTGT GGCGATTCGA AACCATTATG ACCCGGTCCT TCCTGCACTG
ACGGAGTACT TAATTCGGAT CGGGCGAGGT AAGTTTGTCA GACCTCTGTT CTCTGAACTT
CAGGTGGCGG GTTACGATAC AGAGATTAAA GCAATTTATG ATAAGGCCAG AAAGGGCTAT
CACCCATCTA TCGTGGTTCA ACTGGATAAG AGTTTAAAAT TTACCTCGTC ATAA
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| Protein sequence | MPNRWDNNHD YHSFANVDEV RVRHLALTLD VDFHSKQLSG VAELDLEFID KSCRELWLDL
RELSIIKVVD DNEELLAFNI DREDSVLGQR LNIALKSATT KVRVHYLTSP DAQGLQWLTP
EQTSGKKLPF LFSQSQPINA RSWIPLQDSP KARITFEASV TVPLGMRAVM SAMNDAGADL
DGLFTFSMEK AMPTHLLAIA VGELAFGKIG ERTGVYAEPE VLAAAVKEFE DTEKMVEIAE
SLLGPYPWGR YDMIVLPPSF PFGGMENPRL AFITPTLIAG DKSLVSTVAH ELAHSWTGNL
VSNATWRDLW LNEGFTTYFT NRIVEAVFGK EQAELEVVIE YGRLKEELAT TAFEAQNLPA
NVQTQDPNDA FNRFTYDKAS MFVHDLEKRL GREVFDKFLY HYVQHFAFQA ITTEVFVEYA
RDTLLIQHAD KITEAELLEW IYGCGMPSCF TPPQSDSLDK VDVALSMWLK GASAESLATQ
SWRVHHWQYF LTSLPEVLPQ AQLMELDDCF KLTASTNAEI ACDWFRVAIR NHYDPVLPAL
TEYLIRIGRG KFVRPLFSEL QVAGYDTEIK AIYDKARKGY HPSIVVQLDK SLKFTSS
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