| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3289 |
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| Symbol | |
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| ID | 5610401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3994612 |
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| End bp | 3997599 |
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| Gene Length | 2988 bp |
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| Protein Length | 995 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934227 |
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| Product | PKD repeat-containing protein |
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| Protein accession | YP_001475021 |
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| Protein GI | 157376421 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.745526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000829414 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATTACA GAGCTAACAT CATAAGGGTC GCGCTACTAA GCCTATCCTT ATCTGCAGCA
GGTTTATCAG GATCAGATGC CAATGCTGCT AACCCAACGA CGAACACCAA TACCATTTCT
GATGCTACTT CTAATCCCGG CGCTCAGCAC CGAGCCTTCC CTGACGTCAA CCTCCCCGAA
CCCGCCAATG GCGAACACGC CATCGGGCTT TTAGGCGATA AGCTGCCGGA TGTCGCGGCG
GCATATGAAA TGACAACTTC AGAGTTTGCC AAACTGATCA GAACCGATAA GACGGTATGG
TTAGATCGCA GAGCTCATAT CTTCTATGTA GAAGTTGAAG CACCAACAGA GCTCGCCGAA
TCCGATCCTG GCGGCGAAAT CCAAACTGCA CTCAATGAAG TAGAGACCTT TAGTCTCAAT
AGCCGCCCCG GGGCACCGCG AACCATATTT CTCGATTTCG ACGGTCACAC AACCACAGGT
ACCGCCTGGA ATAGCTCCAA TAATGTCACC ACGATAAACT CCCCCGCCTA TAACACAGAC
GGTACCTCGG CCTCCTTCAC TCAACTCGAA CTCGATAGAA TTTATCTGAT GTGGCAACAG
GTAGCCGAAG ACTTTGCCCC ATTTAATGTA AATGTGACAA CCCAGGAACC CTCACCAGAC
AAGATAACGA GAACCACCTC TTCCGATCAG ACATTCGGAA CTCGGGTTAT TATCACGCAA
GATAACTTCG CCAATTGCGG CTGCGGCGGT TTCGCCTATT TAAGAATATT CGATGATTAC
GGCAGTAATG GCGATTATTA CAAACCCGCC TTCGTATTTA ACTCTAGCGT TGTCGGCGCA
GGGGAAGCGA TCACTCATGA GGCCGGCCAT AATCTTGGGC TTAGCCACGA CGGACAGAGT
GATGGCACCA GCTACTACCA GGGACATGGA TCCGGCGCCA CTGGCTGGGC CCCAATCATG
GGAGTCGGCT ATTACCGCGA ACTCGTCCAA TGGAGCAAGG GGGAATACCC CCAGGCGAAC
CAGCAACAAG ATGATATTCA GGTGATACAG AATTACGGCG CGCCTTTGAT GCTCGATGAT
CACGGCGATA GTATCGCTAA TGCCTCGGCG TTAAGCGAAA CTCCCAATGG CGACACGACC
ACACTCGATG GCAACGGCCT GATACGCCGC CGTGATGATA TGGACATGTT TAGCTTCACT
GCCGGCGCGG GAAGTTTCAC TCTGAATATC TCGCCATCCG CTGTAAGCCC GAACCTGGAT
ATTCTGGCTC AGCTCTATAA CAGTTCAGGC ACTCTGATAG CCAGCAATAA CCCCAGCTCT
TCACTCCCCG CGGCGATCAG CGGCAGCTTT GCCAGCGGCG GAGAATACTA CCTCAAGGTG
GATGGCACTG GTAAAGGCGA GCTCTCTACC GGTTACAGTG ATTACGGCAG CTTAGGCTGG
TATACCATCA ATGGTAGCGT GCAAAATGAC GGCAATTTAC AATCCCCGAC CGCCGCCGTC
TCAGTTGGTT ATGTTCCGGG ATATGCACCT ATCACCGCGT TCTTCAATGG TTCAGCCTCC
ACCGATGATA TCGGGATCAC CGACTATAGC TGGAATTTCG GCGACGGTGG AGTGGGTAGT
GGAGTGAGTC CGTCTCATGA ATATCTTGCC CCGGGCGTAT ATAATGTCAC TCTGACCGTT
ACCGATACCG ACAACCTCAC GGACTCAGAC ACGCTGGCCA TCTCTGTGGT TAACCGCTCG
CCGATTGCGA TCGCCAACGC CGACAGCTAC TCAGGCACCG CCCCCCATAG CGTTCAATTC
TATAGTACGG GCTCAAAAGA TCAGGATGAT TTGGGCACCA TTACCTATGC CTGGCTATTC
GGCGACGGCA ACGGTTCAAC TTCCGCCAAT CCGAGTCATC TCTATGCGGC TCAAGGTACA
TATACTCCGA GTCTGACCGT CACCGATAAC TTAGGCGTTC AGGATAGCGT CACACTGTCG
GATATCAGTA TCTCACCACC GGCTTATCTG GACCAATATG CACAAGGCGA GATATTAGGT
TCGGGTACGG TAGGAGGGAA TTACACAGAC ACCTTCGATA ACAGCTCGGC TCAGACAATT
AGGGAGCGGG AGTCCGGCGG CAGAAAAAGC AGTCGCTATA GCTATTTGCT ACATACCTGG
TTATTTAATG TCTCATCGGG TAACACAGTG ACCATACATC TGAACGCCTG GATGACAGGC
TCTTCAGACA GCGATCAGAT GCGCTTCTCC TACTCAGTGA ATGGCGCAGA CTATGTCGAA
TTCACAAGAG TACAGAACAC TGACAATGTG GGACTTAAGT CTTTCTTTAT GCCTCAGGGC
AGCAGCGGGG ATGTACGCAT TCGTGTCGAG GACACAAATC ACACCCCGGG ACGCCGAGGC
TTAGATACCG TCTATATCCA GCAACTCTAT ATCAGTAGCG AGACCCTGCT CGACGGTGAT
GTGCCAGCAA CGCCGTCCAT GCAGACTGCG ACGCCAATAT CATCGAGCCA GATAGATATC
GCCTGGACTG AAACATCGGA GAATGAATCT GGCTTCAATA TCGAGCGCTC AACCGACCAA
AGCAGCTGGA GCTCAGCAGG CTCGGTAGGG GCTAATGTCA CCACTTTCAG CGATAGCGGA
TTATTGGCAG GCACGACCTA TTACTACCGC ATCAGTGCCT TTAACGGTTA TGGCAGCTCG
CTTGAGTCCA ATACCGTTTC GGCCACCACC GATGCTGCAA GCCCCATCAG CCTCACCGCC
ACTGGCAGGA AGGTTAAGGG AATTAAACAT ATCGACCTGC AGTGGTATCA ATACCCAGAT
GTCGATATCT ACTTCGATAA TGCTGACGCC GTTACTTTTA GCGCAGAAAG TAGTGAACCC
TATGGTTACG ATCTCAACAC CGGCCTGAAA GGCGGTGGCA ATCATTCTAT TCAGGTGTGT
AACGCCGGCG GCGGAGACTG CTCGGAGGTG GTGACTGTGA TCTTTTAA
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| Protein sequence | MDYRANIIRV ALLSLSLSAA GLSGSDANAA NPTTNTNTIS DATSNPGAQH RAFPDVNLPE
PANGEHAIGL LGDKLPDVAA AYEMTTSEFA KLIRTDKTVW LDRRAHIFYV EVEAPTELAE
SDPGGEIQTA LNEVETFSLN SRPGAPRTIF LDFDGHTTTG TAWNSSNNVT TINSPAYNTD
GTSASFTQLE LDRIYLMWQQ VAEDFAPFNV NVTTQEPSPD KITRTTSSDQ TFGTRVIITQ
DNFANCGCGG FAYLRIFDDY GSNGDYYKPA FVFNSSVVGA GEAITHEAGH NLGLSHDGQS
DGTSYYQGHG SGATGWAPIM GVGYYRELVQ WSKGEYPQAN QQQDDIQVIQ NYGAPLMLDD
HGDSIANASA LSETPNGDTT TLDGNGLIRR RDDMDMFSFT AGAGSFTLNI SPSAVSPNLD
ILAQLYNSSG TLIASNNPSS SLPAAISGSF ASGGEYYLKV DGTGKGELST GYSDYGSLGW
YTINGSVQND GNLQSPTAAV SVGYVPGYAP ITAFFNGSAS TDDIGITDYS WNFGDGGVGS
GVSPSHEYLA PGVYNVTLTV TDTDNLTDSD TLAISVVNRS PIAIANADSY SGTAPHSVQF
YSTGSKDQDD LGTITYAWLF GDGNGSTSAN PSHLYAAQGT YTPSLTVTDN LGVQDSVTLS
DISISPPAYL DQYAQGEILG SGTVGGNYTD TFDNSSAQTI RERESGGRKS SRYSYLLHTW
LFNVSSGNTV TIHLNAWMTG SSDSDQMRFS YSVNGADYVE FTRVQNTDNV GLKSFFMPQG
SSGDVRIRVE DTNHTPGRRG LDTVYIQQLY ISSETLLDGD VPATPSMQTA TPISSSQIDI
AWTETSENES GFNIERSTDQ SSWSSAGSVG ANVTTFSDSG LLAGTTYYYR ISAFNGYGSS
LESNTVSATT DAASPISLTA TGRKVKGIKH IDLQWYQYPD VDIYFDNADA VTFSAESSEP
YGYDLNTGLK GGGNHSIQVC NAGGGDCSEV VTVIF
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