Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3285 |
Symbol | |
ID | 5610033 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3988497 |
End bp | 3989231 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934223 |
Product | hypothetical protein |
Protein accession | YP_001475017 |
Protein GI | 157376417 |
COG category | [S] Function unknown |
COG ID | [COG3821] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000047604 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTTTTA CCGTTTTGGA TCTCATCTCT TTAATCTGTT TTATCTGTTG CTGGGTCGGC TACACCTCCT TTGCACGTCG TAAAGCCAAG ACCACCAACT GTATCGCTCG TTGTCTGCAT CAACATCGAA TTCATTGGAT GAACGAGTTG ATGACCCGTG AGGTGAGAGT CGGTGAAGCG GCACTTCTGG CCAATCTTGA ACGTAATATT ACCTTCTTTG CCTCGACTAC CATGCTGATC CTTGCCGGTG TGCTAACGTT ATTTGCTCAG GTTGAGCGCT TAGAGGCTGT GATTGCGTCA ATCCCCTATA CGGCGACCCC TAACGATGCC TTGATCCAGC TGAAATTAAG CTTATTGACC TTTATCTTCG TGATGGCCTT TTTCCAGTTT ACCTGGTCGA TGCGTCAATA TGGTTTTCTC AATGTGATGG TCGGCGCCGC ACCCATCGAC CCAACGGGTG GCGGGGATGA CAGACTTCGC TGCTATGCAA AACAGATGGC GATAGTGCAA GATCAAGCGG CGCACTCATA CAATTATGGA CTCAGGGCCT ATTATTTTGC TATGGCGGTC TTGAGCTGGT TTTTCCATCC GGCCCTGTTC ATCGTAACCA GTCTGTTTGT GGTCTATACC TTGTATGCTC GGGAATTTAA CTCTAAGGCC GTGGTGGCCA TTACATCCGG AATGCAGGTG TTGAATGAGC AGGAAGATAA GAAAAAAGCT TCCCGGCTCA AGTGA
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Protein sequence | MAFTVLDLIS LICFICCWVG YTSFARRKAK TTNCIARCLH QHRIHWMNEL MTREVRVGEA ALLANLERNI TFFASTTMLI LAGVLTLFAQ VERLEAVIAS IPYTATPNDA LIQLKLSLLT FIFVMAFFQF TWSMRQYGFL NVMVGAAPID PTGGGDDRLR CYAKQMAIVQ DQAAHSYNYG LRAYYFAMAV LSWFFHPALF IVTSLFVVYT LYAREFNSKA VVAITSGMQV LNEQEDKKKA SRLK
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