| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3280 |
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| Symbol | |
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| ID | 5610446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3982093 |
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| End bp | 3982779 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934218 |
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| Product | DNA-binding response regulator |
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| Protein accession | YP_001475012 |
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| Protein GI | 157376412 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000001291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000698043 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCTAAAG CAAACATACT CATCATTGAG GATGATAAAG AGATCTCGCG GCTAACCGCC
ATGTATCTCG AAGCGGAAGA TTATCTGACA CAGATCATCG ACGATGGTTT GCATGCGGTA
AACGCAGTAC GACAACATCA ACCGGATCTG ATCATACTCG ACCTGATGTT ACCGGGTTTA
GACGGCATCG AGATCTGTAA ACAGGTGCGC ACCTTCCATA CCGGGCCGAT ACTCGTACTG
ACCGCCTGCG CCGATGATAT GAGTGAAGTC AGTCTGCTCA AACTGGGCGC CGACGATTAC
CTGACAAAAC CGGTGCGCCC CCATGTAATG GTAGCAAGAA TTGAAGCCCT GCTCAGGCGG
ACTCAAGTCG CTCAGCCGGC AAAAAATCAG CTTAATTTGG GTCAGCTTCA TATCGATACG
TCTAGACAGC TCGTCAGCTA CGGCGAAATC ACCCCCCAAC TGACTGCGGC CGAATATGAG
ATGTTACTGC TTCTGGCATC CAATGCCGGG TGCATCGTAT CCAGAGACGA TTGTTGTCGC
TCCCTAAGAG GCATAGATTA TGACTTTAAT GACAGATCGG TAGATATGCG GATCTCAGGG
TTGAGAAAGA AATTAAATGA CGATACCCCA CCATACAAGG TCATATTAAC GGTACGAAAC
AAAGGATATA TGTTGATCGA TGGCTAA
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| Protein sequence | MAKANILIIE DDKEISRLTA MYLEAEDYLT QIIDDGLHAV NAVRQHQPDL IILDLMLPGL
DGIEICKQVR TFHTGPILVL TACADDMSEV SLLKLGADDY LTKPVRPHVM VARIEALLRR
TQVAQPAKNQ LNLGQLHIDT SRQLVSYGEI TPQLTAAEYE MLLLLASNAG CIVSRDDCCR
SLRGIDYDFN DRSVDMRISG LRKKLNDDTP PYKVILTVRN KGYMLIDG
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