| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3265 |
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| Symbol | |
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| ID | 5613223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3964436 |
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| End bp | 3965134 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934203 |
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| Product | putative ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_001474997 |
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| Protein GI | 157376397 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.777332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.943696 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGCTTG ATAAATTTTT GTGTAAGAGT ACTGAACTGA CTCGCATTGA GGCGACGGCA
TTAATTGTTG CTGGTGAGGT GCTCGTCAAT GGGCAAACTG TCACATCGGC GTCGACTCAG
GTGCATGAAA ATAACCGGAT CACCTTGGAT GGGCAAGTGC TCACCCCACG AGCCTCACGA
TATATCATGA TGCACAAGCC CCTCGATACT CTCAGCTCAA ATGTCGATGG CGATTATCCC
TCTGTGATGA ACTGCCTCGA TGTCGATAAG GTGTGTGACC TTCATATTGC CGGACGTTTA
GATGCCGATA CCACAGGTTT AGTCTTGGTC ACCGATGATG GGCGTTGGTC GTTTAATATT
ATTAACCCTA AGTATCATTG TGAAAAAGTT TATCGGGTTA GTTTGCGCGA TCCTATTAAT
GATGATGTTG CCGGGAAATT TGCCTGCGGG GTTCAGCTTC AGGGGGAAGC GTCACTGACT
CTACCGGCAA AGCTTGAGGT GGTGAGCCCA ACAGAGGTGC TATTAACCAT CACGGAAGGC
AGATACCATC AGGTAAAGCG CATGTTTGCC GCCGTGGGGA ATCGGGTTAA CGGCCTGCAT
CGACAGCAAG TTGGCGATAT CAAACTGGAT ATTGGGCTCG GACAGTGGCG GTATCTGACA
ACTGAAGAGA TTAACTCATT TTCCGTGCTC CAGTTATAG
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| Protein sequence | MRLDKFLCKS TELTRIEATA LIVAGEVLVN GQTVTSASTQ VHENNRITLD GQVLTPRASR
YIMMHKPLDT LSSNVDGDYP SVMNCLDVDK VCDLHIAGRL DADTTGLVLV TDDGRWSFNI
INPKYHCEKV YRVSLRDPIN DDVAGKFACG VQLQGEASLT LPAKLEVVSP TEVLLTITEG
RYHQVKRMFA AVGNRVNGLH RQQVGDIKLD IGLGQWRYLT TEEINSFSVL QL
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