| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3246 |
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| Symbol | |
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| ID | 5612784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3939689 |
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| End bp | 3940384 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934184 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001474978 |
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| Protein GI | 157376378 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000050319 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGAGTAC TTCTGGTAGA AGATGACATT GAGCTACAAA CCAATTTAAA ACAGCATTTA
GTGGACGCAA ATTACAACAT AGATGTGGCC GATGATGGTG AAATTGGCCT GTTTCAGGGC
ACCGAATACC GTTACGATGC AGCCATTATT GATGTTGGTT TACCCAAGCT CGATGGCATC
GCATTAATCA AAACACTTCG CGAACAGGAG ATAGACTTCC CGATTTTGAT CTTAACGGCC
CGTGACAGCT GGCAAGATAA GGTTGAGGGG CTCGATGCCG GCGCCGACGA TTATCTCACG
AAACCATTTC ATCCCGAGGA GTTAGTTGCC AGACTCAAGG CGCTTATCCG TCGCTCGGCC
GGTAAGGCCA GTCCGGTTGT GAATAACGGC CCCTTCAGCA TTAATACCAG CAGTTTAGAG
ATCAAGAAAG GTGATGTGGT GATCACCCTA AGCGGCACAG AATATAAGTT ATTTGAATAC
TTTATGCTGC ACCCGGGTGA AGTGATATCT AAAACCGTAC TCACGGAGCA TATATACGAT
CAAGACTTCG ATCTGGACTC TAACGTTATC GAAGTCTTTA TCAGAAGATT GAGAAAGAAG
CTGGATCCGG ATAATTCATT TAGCCTCATC GAGACCCTGC GGGGACAGGG ATATCGCCTG
ACTCAGATGC AAAAAACAGA ACAAAGTGAT GAGTAA
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| Protein sequence | MRVLLVEDDI ELQTNLKQHL VDANYNIDVA DDGEIGLFQG TEYRYDAAII DVGLPKLDGI
ALIKTLREQE IDFPILILTA RDSWQDKVEG LDAGADDYLT KPFHPEELVA RLKALIRRSA
GKASPVVNNG PFSINTSSLE IKKGDVVITL SGTEYKLFEY FMLHPGEVIS KTVLTEHIYD
QDFDLDSNVI EVFIRRLRKK LDPDNSFSLI ETLRGQGYRL TQMQKTEQSD E
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