Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3242 |
Symbol | |
ID | 5614030 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3934779 |
End bp | 3937214 |
Gene Length | 2436 bp |
Protein Length | 811 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934180 |
Product | TonB-dependent receptor |
Protein accession | YP_001474974 |
Protein GI | 157376374 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000414671 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCAAT TTCGTTTTTC ACTACTTGCC GTTGCTTGTG CTTCAACATT TTTACCTATG ACGCTTCACG CTGCACAGGC CGAAGGGCTG GAAAACACGG ACGTAGAACG TATCACCGTC TATGGAAGAC AAAATCAGGT AGTTATGAAT TCAGGGCTGG CCACAAAGTC AGATATGTCT TTGATGGAAA CGCCAGCGGC GGTTGTTATC GTCGATGAAG AATTGATTAA CGCTCAGGGC GTCAACAGCC TGCAAGATTT AGTGCGTAAC ATCAGTGGCG TGACTCAGGC GGGTAATAAC TATGGTATCG GAGATAATCT GGTTATCCGT GGTTTGGGCG CAAACTATAC CTATGATGGT ATGTATGGCG GTGCGGGCTT GGGTAACACC TTTAACCCTA CACGGTCACT CACCAATGTC GAGTCGGTCG AGGTGCTTAA GGGACCTGCA ACCGGGCTTT ATGGCATGGG CAGCGCCGGT GGTGTGATCA ACCTGATTGA GAAGAAGCCG CAGTTTGAGT CTAAAAACGA ATTTGGTGTT GAGGTCGGTC AGTGGGATAC CTACTCGTTA AGCTTGGATA GCACGGGTGG TTTAAGCGAT AAACTGGCTT ATCGCGTCGT GGCTAAAACG GCACGTAGCG ACGGCTACCG TGATATCGGC ACCGACAGGG ATGAGGTGTA CAGCTCACTT AAATATGTGT TTGACGATTC TCAAGACCTG ATGTTGTCGG CATCCTATAT CAATGACTCC ATTGCCGTTG ACTCTATCGG TCACCCTATC CGCATTTATA ATGCCGACTC AGTCGGTGGT AAAAACGCCG GCGAGGCAAG CTGGGAAGAC TTGATTAATG ACCCTGAGGG TAAAGGCATC CAGCTGAGTG ATGAGCAGCG CCAACAGTTA GCCGACTCAT TAGCCAATAG TGATGGCCTG ACGCCTTATG AGTTTGGTCA TGCGGGCCTA ATCTCACCTA TGGCGAAAGA TAACGAAGGA GAGGAGTTAC GATTTAAGCT GACTCATAAC ATCTTCTTCA ATGACAATCT GTTCCTTAAT CAGCAGCTGC AGTACCGTGA TTACACTTCA GGCTTCTCTC GCCAGACGGG CGCCTATAAC TATGTGTACT GGAACCGTCG CGGCACCATC AACGCCGATC CCCGTGCCCC TCTGGTCGAA GATGGTGTCT TGTACCCGTT TGCCGCACGT CGTCAGGAGT ACCGTCAGGT ATCTGCCGAT GAGACCTCAT GGCAGTATTT CGCCGATCTC AGATATGACT TCGAGCTCGC AGGTATCGAT AACGAGCTGT TAGTCAATGC TAACTTCGAA GACCGGAATA TTCGCTTCAA GCAGTACTCT ATCTATGACG CCGATAAGGT GATTAAAAAC AAGGCGGGTG AGGTTGTCTA CCAGGGAGCG TTGCCTTATA TCTATGATAT TCGCAAGCCA AACTGGGCTG AAGGGAGTTT TGAGGATCAC GATCCTCTGA TGACCAGCAA CTATAACAAG AAGGTCAATG CATGGGGCGT CGGCCTGCAG CATGTCGGCT ATTTCGATTA TGGATTTACC ACTCGTATCG GCGTAGCGTT TAACGAGATC AAGCAGATCT ATGAGCACTT CGGTGTCGAT GAGCGTTATC GCGCCAGCGC CGCAGAGCCT ACACCGGAAG CCGATACCAG TGACAACGGC GTAACCTATA ACTTAGGCGT GACCTATATG CCGACGGACG ATCTCTCCTT CTTCGTTAAC CACTCTAAGG GACGCACGGC TTACGGTGTC TTAGATGGTG TTGCCGGGAA TGGTAAAGAC AGAAAAGATT CTGAGTCGGT GAGTGACGAC TTGGGTATGC GATTGAAGGC ATTTGACGAT CAGATGCTGA CATCTCTGGT GCTGTTCAAG AGTTCACGCA CCAACCTTAG ATATAATAAC CTGGATTTTG AAGCGGGTGT CAGTGGTCCT GAGGTGCAAG AATTTTTCTA TGATGGCAGC GAAGAGACCA CTGGTGTCGA GCTGGATATG AACGCTCATC TCAATGAGCA GTGGGCCATT AATGTAAACG GTGTTTATCA GGATGCGCGG GACAAGAAAG ATCCAAATCG AAGCAGCTAT GATACCCGCC AGAAAGGTGT ACCTTACGTC ACTGCCAGTG CCTGGGTCAC CTATGGTGCC GAGTGGTTCT CGCTGAGCAG TCCACTGGAC ATCAGCCTGG GTGCGAAGTA TGTCGATGAG CGTAGCACGA ACTCAAGCTC ATTCGGTATC CCGACCGGGT ATGTACCGAG TTATACCGTG GTAGATACCG CTGTCAGTTA TCAGGCCGAC AGCTGGAAGT TACAGCTTAA CGTGAATAAC CTGTTCAACG AGACCTACTA CAATAAGGCG ATGTTCTTAG GTGGTATGCC GGGTGAGGAA CGTAATGCTA AGGTGACATT TAGTTATCAG TTGTAG
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Protein sequence | MNQFRFSLLA VACASTFLPM TLHAAQAEGL ENTDVERITV YGRQNQVVMN SGLATKSDMS LMETPAAVVI VDEELINAQG VNSLQDLVRN ISGVTQAGNN YGIGDNLVIR GLGANYTYDG MYGGAGLGNT FNPTRSLTNV ESVEVLKGPA TGLYGMGSAG GVINLIEKKP QFESKNEFGV EVGQWDTYSL SLDSTGGLSD KLAYRVVAKT ARSDGYRDIG TDRDEVYSSL KYVFDDSQDL MLSASYINDS IAVDSIGHPI RIYNADSVGG KNAGEASWED LINDPEGKGI QLSDEQRQQL ADSLANSDGL TPYEFGHAGL ISPMAKDNEG EELRFKLTHN IFFNDNLFLN QQLQYRDYTS GFSRQTGAYN YVYWNRRGTI NADPRAPLVE DGVLYPFAAR RQEYRQVSAD ETSWQYFADL RYDFELAGID NELLVNANFE DRNIRFKQYS IYDADKVIKN KAGEVVYQGA LPYIYDIRKP NWAEGSFEDH DPLMTSNYNK KVNAWGVGLQ HVGYFDYGFT TRIGVAFNEI KQIYEHFGVD ERYRASAAEP TPEADTSDNG VTYNLGVTYM PTDDLSFFVN HSKGRTAYGV LDGVAGNGKD RKDSESVSDD LGMRLKAFDD QMLTSLVLFK SSRTNLRYNN LDFEAGVSGP EVQEFFYDGS EETTGVELDM NAHLNEQWAI NVNGVYQDAR DKKDPNRSSY DTRQKGVPYV TASAWVTYGA EWFSLSSPLD ISLGAKYVDE RSTNSSSFGI PTGYVPSYTV VDTAVSYQAD SWKLQLNVNN LFNETYYNKA MFLGGMPGEE RNAKVTFSYQ L
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