Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3236 |
Symbol | |
ID | 5614062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3929723 |
End bp | 3931357 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934174 |
Product | methyl-accepting chemotaxis protein |
Protein accession | YP_001474968 |
Protein GI | 157376368 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGAATA TTAAAAACTT ATCGGTTAAT AACAAAATTG CACTGGCCTT TAGCTGCATC GCCGTGGCAG TAATAGCCCT TAGCATGCTG TTTATATCGG GACTGAATAA CACACGCGAT AATATCCTGA CGCTGACTGA CGAAGTACTA CCCAATGTCT TATTAGTCGA GAAAATAAAA TTTGTCACCA TCTTCATTCG CCGGGATCAG TTCTCTTTCC TGCCCAGTAT CGGCGATCCG GAGATGAAAA GCTGGATGCA GACAACCGAC AACATGATTG ATGATGTCAC CGATATGATC AACACCTACG AAAAGAGCAT TCAGACAGAA GAGGAGCGCC AAGCGCTCAC ATTAGCGAGA CGCAACTGGC AAGATTACCT CAGTGCTCAG AGTGGTTTCA ACGACATCGT CCTGCAAAAT GATCTGGCAG GCGCAAACAC ATACCTGCTG AGTTCATATA AACAGTTTAA CAGGATGCAA GACGCCTTAA CCAAGCTGAC AGAGATCAAT TTAGCACGCA CGGAAACAGA CCGCACCAAT ACGCTCGAAG GTGTCAGCAC GGCAACCATG AAGACCTATA TCGGCGTTGG GGCATTATTT ACCTTAATGG CAGTGATGAC CCTCTTCCTT GGACGACAAA TTCGCAACCC ATTGCGTGAA GTCATGACTA TGGCCGAAGA GATCGCCAAT GGTAATCTGG CCTATCAGAT AAAACGCGAC CAGATAGGCA ATGACGAGCT TGGCCAGCTG GCCGACTCCT GTATCAGCAT GCAGAAAAAC TTGCGTGAGT TGGTCGATGA GATAGGCGGC GCCGTGGTGC AACTCAGCTC CTCGATCGAA GAGGTGAGCG CCATCTCTGA GCAGTCATCT CAGGGCATGT CACAGCAGCA AAATGAGATC ACTATGGTTG CCACTGCGAT GCAGCAGATG CAGGCGACCG TCAATGAAGT CGCCATGAAT ACCGAAGATG CCTCGAGTTC GGCAAATTCG GCAACCGAGC GTGCCGATCA GGGCAATCAA GAGGTTCAAC AGAACATCAT CGAGATCCAG CAGGTTTCTG AGGTCATAGA AAATGCCGGT GAGATGGTGG CCCAGCTCGA GAAAGATTCA GCGAGTATCT CCATGGTGGT CGATGTTATC GGCGGCATTG CCGAGCAAAC AAACCTGCTG GCCCTGAATG CGGCCATCGA AGCGGCGCGC GCCGGTGAGC AGGGACGAGG CTTCGCCGTC GTCGCCGATG AAGTACGCAC ACTGGCAGGA AGAACCCAGG ATTCTACCCG TCAGATTGTC GAGATAATCG AGAAGCTGCA ACTCCGCGCC GTCGAGGCCG GAGCTGCGAC TAAACAGAGC TGTGAAATGA TCCGTGGCTG CGTGTCACAA ACCCACTCCA CGGGCGAGAA GATCTCCGAG ATTGAACAAG CAGTCACACA GATCGCGGCG ATGAATATTC AGATCGCCAG TGCCTGCAGC GAGCAAAACT CGGTGACCGA AGATCTCAGC CGTAGCGTAG AAACCATCAA CGTCTCCTCA TCGGAGGCGG CAACCGGAGC CGGCCAGACG GCGCAAGCCT GTATCGAACT AAGCCAGCTC TCCTTAGGCC TCAAGAGCAT GGTCGATCAA TTTAAGACCG CCTAA
|
Protein sequence | MMNIKNLSVN NKIALAFSCI AVAVIALSML FISGLNNTRD NILTLTDEVL PNVLLVEKIK FVTIFIRRDQ FSFLPSIGDP EMKSWMQTTD NMIDDVTDMI NTYEKSIQTE EERQALTLAR RNWQDYLSAQ SGFNDIVLQN DLAGANTYLL SSYKQFNRMQ DALTKLTEIN LARTETDRTN TLEGVSTATM KTYIGVGALF TLMAVMTLFL GRQIRNPLRE VMTMAEEIAN GNLAYQIKRD QIGNDELGQL ADSCISMQKN LRELVDEIGG AVVQLSSSIE EVSAISEQSS QGMSQQQNEI TMVATAMQQM QATVNEVAMN TEDASSSANS ATERADQGNQ EVQQNIIEIQ QVSEVIENAG EMVAQLEKDS ASISMVVDVI GGIAEQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRTLAG RTQDSTRQIV EIIEKLQLRA VEAGAATKQS CEMIRGCVSQ THSTGEKISE IEQAVTQIAA MNIQIASACS EQNSVTEDLS RSVETINVSS SEAATGAGQT AQACIELSQL SLGLKSMVDQ FKTA
|
| |