Gene Ssed_3236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3236 
Symbol 
ID5614062 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3929723 
End bp3931357 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content52% 
IMG OID640934174 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001474968 
Protein GI157376368 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAATA TTAAAAACTT ATCGGTTAAT AACAAAATTG CACTGGCCTT TAGCTGCATC 
GCCGTGGCAG TAATAGCCCT TAGCATGCTG TTTATATCGG GACTGAATAA CACACGCGAT
AATATCCTGA CGCTGACTGA CGAAGTACTA CCCAATGTCT TATTAGTCGA GAAAATAAAA
TTTGTCACCA TCTTCATTCG CCGGGATCAG TTCTCTTTCC TGCCCAGTAT CGGCGATCCG
GAGATGAAAA GCTGGATGCA GACAACCGAC AACATGATTG ATGATGTCAC CGATATGATC
AACACCTACG AAAAGAGCAT TCAGACAGAA GAGGAGCGCC AAGCGCTCAC ATTAGCGAGA
CGCAACTGGC AAGATTACCT CAGTGCTCAG AGTGGTTTCA ACGACATCGT CCTGCAAAAT
GATCTGGCAG GCGCAAACAC ATACCTGCTG AGTTCATATA AACAGTTTAA CAGGATGCAA
GACGCCTTAA CCAAGCTGAC AGAGATCAAT TTAGCACGCA CGGAAACAGA CCGCACCAAT
ACGCTCGAAG GTGTCAGCAC GGCAACCATG AAGACCTATA TCGGCGTTGG GGCATTATTT
ACCTTAATGG CAGTGATGAC CCTCTTCCTT GGACGACAAA TTCGCAACCC ATTGCGTGAA
GTCATGACTA TGGCCGAAGA GATCGCCAAT GGTAATCTGG CCTATCAGAT AAAACGCGAC
CAGATAGGCA ATGACGAGCT TGGCCAGCTG GCCGACTCCT GTATCAGCAT GCAGAAAAAC
TTGCGTGAGT TGGTCGATGA GATAGGCGGC GCCGTGGTGC AACTCAGCTC CTCGATCGAA
GAGGTGAGCG CCATCTCTGA GCAGTCATCT CAGGGCATGT CACAGCAGCA AAATGAGATC
ACTATGGTTG CCACTGCGAT GCAGCAGATG CAGGCGACCG TCAATGAAGT CGCCATGAAT
ACCGAAGATG CCTCGAGTTC GGCAAATTCG GCAACCGAGC GTGCCGATCA GGGCAATCAA
GAGGTTCAAC AGAACATCAT CGAGATCCAG CAGGTTTCTG AGGTCATAGA AAATGCCGGT
GAGATGGTGG CCCAGCTCGA GAAAGATTCA GCGAGTATCT CCATGGTGGT CGATGTTATC
GGCGGCATTG CCGAGCAAAC AAACCTGCTG GCCCTGAATG CGGCCATCGA AGCGGCGCGC
GCCGGTGAGC AGGGACGAGG CTTCGCCGTC GTCGCCGATG AAGTACGCAC ACTGGCAGGA
AGAACCCAGG ATTCTACCCG TCAGATTGTC GAGATAATCG AGAAGCTGCA ACTCCGCGCC
GTCGAGGCCG GAGCTGCGAC TAAACAGAGC TGTGAAATGA TCCGTGGCTG CGTGTCACAA
ACCCACTCCA CGGGCGAGAA GATCTCCGAG ATTGAACAAG CAGTCACACA GATCGCGGCG
ATGAATATTC AGATCGCCAG TGCCTGCAGC GAGCAAAACT CGGTGACCGA AGATCTCAGC
CGTAGCGTAG AAACCATCAA CGTCTCCTCA TCGGAGGCGG CAACCGGAGC CGGCCAGACG
GCGCAAGCCT GTATCGAACT AAGCCAGCTC TCCTTAGGCC TCAAGAGCAT GGTCGATCAA
TTTAAGACCG CCTAA
 
Protein sequence
MMNIKNLSVN NKIALAFSCI AVAVIALSML FISGLNNTRD NILTLTDEVL PNVLLVEKIK 
FVTIFIRRDQ FSFLPSIGDP EMKSWMQTTD NMIDDVTDMI NTYEKSIQTE EERQALTLAR
RNWQDYLSAQ SGFNDIVLQN DLAGANTYLL SSYKQFNRMQ DALTKLTEIN LARTETDRTN
TLEGVSTATM KTYIGVGALF TLMAVMTLFL GRQIRNPLRE VMTMAEEIAN GNLAYQIKRD
QIGNDELGQL ADSCISMQKN LRELVDEIGG AVVQLSSSIE EVSAISEQSS QGMSQQQNEI
TMVATAMQQM QATVNEVAMN TEDASSSANS ATERADQGNQ EVQQNIIEIQ QVSEVIENAG
EMVAQLEKDS ASISMVVDVI GGIAEQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRTLAG
RTQDSTRQIV EIIEKLQLRA VEAGAATKQS CEMIRGCVSQ THSTGEKISE IEQAVTQIAA
MNIQIASACS EQNSVTEDLS RSVETINVSS SEAATGAGQT AQACIELSQL SLGLKSMVDQ
FKTA