| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3161 |
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| Symbol | rpsB |
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| ID | 5610306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3817800 |
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| End bp | 3818528 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934099 |
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| Product | 30S ribosomal protein S2 |
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| Protein accession | YP_001474893 |
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| Protein GI | 157376293 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0052] Ribosomal protein S2 |
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| TIGRFAM ID | [TIGR01011] ribosomal protein S2, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00024185 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.41061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTACAG TTTCAATGCG CGACATGCTA CAAGCCGGTG TTCACTTCGG TCACCAGACT
CGTTACTGGA ACCCAAAGAT GAAGCCTTTC ATCTTCGGTG CTCGTAATGG TGTTCACATC
ATCAACCTAG AGCACACTGT GCCTATGTTC AATGAAGCAC TTGCTTTCAT CAGCAATGTT
GCATCAAAGA AAGGTAAAGT TCTTTTCGTT GGTACTAAGC GTGCTGCAAG CGAAGCTATC
AAAGAATCTG CTATCTCTTG TGAGCAGTTC TACGTCGATC ACCGCTGGTT AGGCGGCATG
TTGACTAACT GGAAAACAGT TCGTCAATCA ATCAAGCGTC TTAAAGACCT TGAAAGCCAG
TCTGTAGACG GTACTTTCGA CAAGCTTACT AAGAAAGAGG CGCTAATGCG TACTCGCGAG
CTTGAGAAGT TAGAAAAATC TCTTGGTGGT ATCAAGAACA TGGGCGGCCT ACCTGACGTT
ATCTTCGTTA TCGGTGCTGA CCATGAGCAT ATCGCTATTA AAGAAGCTAA CAACTTAGGT
ATTCCAGTTG TAGCTGTTGT TGATACTAAC TCTTCACCAG ACGGTATCAA CTACATCGTT
CCTGGTAACG ATGACGCTAT GCGTTCTATC CGTTTATACA CTCAGTCTGT TGCTGCTGCC
GCTAAAGCTG GTCGTGGTCA AGACCTTGCT GTACAAGCTG AGCAAGACGG TTTCGTAGAA
GCTGAATAA
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| Protein sequence | MTTVSMRDML QAGVHFGHQT RYWNPKMKPF IFGARNGVHI INLEHTVPMF NEALAFISNV
ASKKGKVLFV GTKRAASEAI KESAISCEQF YVDHRWLGGM LTNWKTVRQS IKRLKDLESQ
SVDGTFDKLT KKEALMRTRE LEKLEKSLGG IKNMGGLPDV IFVIGADHEH IAIKEANNLG
IPVVAVVDTN SSPDGINYIV PGNDDAMRSI RLYTQSVAAA AKAGRGQDLA VQAEQDGFVE
AE
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