| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3152 |
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| Symbol | |
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| ID | 5610200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3807934 |
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| End bp | 3808428 |
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| Gene Length | 495 bp |
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| Protein Length | 164 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934090 |
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| Product | outer membrane chaperone Skp (OmpH) |
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| Protein accession | YP_001474884 |
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| Protein GI | 157376284 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2825] Outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000722219 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0243335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATC GCGCGATGAT GGTTTTGGTT CTTCTTGCTG CACCTATTGC GGCACAAGCC
GAGAAAATTG CAGTCGTTGA TATGCAAGCC GTTTTCGAGC AGTTACCACA GCGTGAAGCG
GTAAGCAAAA CACTTAAAAC TGAGTTTGGT GACCGTGTTG CCAGCGTTCA GAAAATGCAG
GAAGAGTTGC GTGGCATGCT AGAGAAGCAG CAACGTGATG GTGCCCTTAT GAGCGAGTCT
CAGAAGACTG AGATGGTTCG TAAGATGGAG TCTATGAAGT CTGAGTTGCA GCTTAAAGGT
AAGGCGCTTG ATGAAGATAT GCGTCGTCGT CAGGGTGAAG AGCAGAACAA GCTTTTAGTT
AAAGTTCAGC AAGCTATCAA CAAGATTGCT GAAGCTGAAA GCTATGACAT GGTGCTTCAA
CGTGGCGCGG TTATCTATGT TAAGCCTACT GCCGATATCA GCAGCAAAGT CGTTGACGCA
CTAAGCAAAG GTTAA
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| Protein sequence | MFNRAMMVLV LLAAPIAAQA EKIAVVDMQA VFEQLPQREA VSKTLKTEFG DRVASVQKMQ
EELRGMLEKQ QRDGALMSES QKTEMVRKME SMKSELQLKG KALDEDMRRR QGEEQNKLLV
KVQQAINKIA EAESYDMVLQ RGAVIYVKPT ADISSKVVDA LSKG
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