Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3151 |
Symbol | lpxD |
ID | 5610199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3806889 |
End bp | 3807914 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934089 |
Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
Protein accession | YP_001474883 |
Protein GI | 157376283 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000238137 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.02646 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGCT ACACCATAAA AGAGTTGGCT CAGAAGCTTG GCGGTGATAT TCAAGGTGAT GAGACTCTGG TTATTTCCAG TGTTGCTACC TTGGAGAATG CCGGAGCAGG CCAACTCTCT TTTTTAGCCA ATTCAAAATA TCGTGCCCAA TTGGAATCAA CCCAAGCGAG TGCGGTGTTG ATCTCTCCTA AAGAGATTGA TGGTTATTCC GGTAACGCGA TCATTTTAAG CGATCCTTAT GTTGGTTTTG CCCGTGTATC TCAGTTATTA GATACCACGC CAAAGGCTGC ACAAGGCATT CACCCATCTG CAATTATTCA TCCGACTGCT AAGCTGGGTG AAGATGTTGC AGTGGGTCCA AATGCTGTTA TCGGTGAAAA CGTCATCCTT GGTGAGCGGG TACAAGTTGG CGCCGGCTCG GTGGTTGGCC AAGACTGTAT CTTAGGCTCA GGCACACGTC TGTGGGCTAA TGTCACTATT TACCATGATG TTCACCTTGG TCAGGACTGC ATTATCCATT CAGGTGCCGT GATTGGTTCC GATGGCTTTG GTTATGCCAA TGAACGCGGT CAATGGATTA AAATTCCACA GACCGGGGGC GTTAGGGTGG GTGATCGAGT TGAAATCGGT GCCAGTACTA CGGTCGACCG TGGTGCGATT GAGCACACTG AGATCCATGA CGGTGTGATA CTCGATAATC AGGTTCAGAT TGCTCATAAC GATATTATCG GTGAAAATAC CGCCATTGCC GGCAACTCTA CCATTGCGGG AAGCACCCGG ATAGGTAAGT ACTGTATCAT AGGTGGAAAC AGTGCAGTAG CGGGCCATCT GAGCGTAGCC GATGGCACCC ATATCTCAGG TGCGACCAAT GTCACCAGTA TTATTCGTGA GCGTGGTGTC TATAGCTCAG CCACTATCGC CATGGACAAT AAATTATGGC GCCGAAATAC GGTTCGTTTC AGACAACTGG ATGAGCTTTT TCAGCGTGTT AAAAAGCTTG AAAAAAGTGT ACCAACAGAA GATTAA
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Protein sequence | MKSYTIKELA QKLGGDIQGD ETLVISSVAT LENAGAGQLS FLANSKYRAQ LESTQASAVL ISPKEIDGYS GNAIILSDPY VGFARVSQLL DTTPKAAQGI HPSAIIHPTA KLGEDVAVGP NAVIGENVIL GERVQVGAGS VVGQDCILGS GTRLWANVTI YHDVHLGQDC IIHSGAVIGS DGFGYANERG QWIKIPQTGG VRVGDRVEIG ASTTVDRGAI EHTEIHDGVI LDNQVQIAHN DIIGENTAIA GNSTIAGSTR IGKYCIIGGN SAVAGHLSVA DGTHISGATN VTSIIRERGV YSSATIAMDN KLWRRNTVRF RQLDELFQRV KKLEKSVPTE D
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