| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3139 |
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| Symbol | |
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| ID | 5611271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3789169 |
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| End bp | 3792654 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934077 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001474871 |
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| Protein GI | 157376271 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.305564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCCCA ACTGGCTGTT AGTCACCATC AGTATCAGCT ATATCGGCTT ACTCTTTCTG
ATGGCTTTCC TCGGTGACAG ATACCGAGAC AGACTGGTCA ATCGACAACA CACGGTTATC
TACGCGCTTT CTCTGGGAGT CTATTGCACC TCGTGGGGGT TTTTAGGGAC CGCCGGACAG
GCGGCGAGTA ACTCATTTTC ATACCTGCCG GTATACATTG CCCCTATACT GCTGTTTATT
TTTGCCTGGC CATTTATTCA GAGGCTGATC CGCGTCAGCC TTAAACTCAA TATCACCTCT
ATCGCCGATC TGCTCGCGGC CCGGTTTGGA AAATCACAAC TGCTGGCCTT CATCGTGACC
CTGGTCGCCC TGTTTGGCAC CTTGCCCTAT ATTGCCCTGC AGCTGAAAGC CATCGTTAAC
TCCTACGAGA TCTTGCGGCA AGATCATCTC ATGTCTTCAT GGCAGATAGG CGGCGTGGTG
AGTATTATTT TGGCAGGTTT TACCATCATC TTCGGGGTTA GGGCCATCGA CGTCACCGAG
CGTCACCCGG GTATGATGTT AGCGATCGCC TTCGAGTCCT TCGTCAAGCT TGTCGCCTAC
CTGACTGTCG GCATATTTGT CTCATTTTTT CTGTTCGACT CTCCGCTGCA AATTTGGAAC
TTAGCAAATG AGAGCTTACC CGCATCAACC GAGTTTAATT ACCCGAACCT GGTCTCAATG
TTTGGCTTGC TCTTTATCGT CCTCTCCGCA TTTCTCTGTC TGCCCCGGCA ATTCCAGGTA
CTCATCGTCG AATTGAAAGA GCAGAAACAT GCCATATGGA GTAGATGGAC CTTCCCGATA
TACATTTTAG TATTCGCATT TTTTGCCACC CCACTGGGAC AGGCCGGTAA CCTGCTCTAT
GGCGATTCAC TCAAGAGTGA TGCCTATGTG CTGTTTTTGC CGGCCTTCAA TGGTCAGGCC
TGGCTGGGGT TATTCAGCTT TCTGGGCGCT ATCTCTGCGG CAAGCTCCAT GGTCATCATC
TCCACAATCG CCTTGAGTAC CATGCTAAGT AATGAAGTGG TGTTCCCCAC CCTGTTCAAA
TTCAGCAATA TTCAAAGTAC CAACTTTCAC CGCTTTCGCT CGCACCTGTT GAGTATACGT
AAGGCGCTGG TGTTGCTTGT CATCTTCTTA AGTTACGGCA TGTTTTTACT GGCACCACCA
GACACGCTTG CCTCCTTAGG AGAAGTCGCA TTTGGTGCCA TAGCCCAGAT AGGACCGACC
CTGTTTGCCG CCTTTTTGTG GCGAAGGGTG ACGCTGGTCG GCGCTATCTT AGGGATCTCC
AGTGGCTTCA GCCTCTGGCT TGTACTCAAT ATGCTCCCTC AGCTGGGCTT TTACCCTCAT
CCACTGGCCG GCAGCGAATA TTCGATGACG ACCATGGCAA CCCTGATAGG CCTACTCGTC
AACATCCTTA TGCTGTGGCT GGTTTCACTG CTCACACGCC AAAGCGTGCA TGAGCAGATG
CAGAACGAGC ACTTTATTCA GAGGCCGGAT ATCGATAATT TGCCCTCCGG GGTCCAAAAA
AATATAAAAC CTAAAGATCT CGAATTGCTG GTCGCTCGTT TTGTGGGTGA AGAGCGAGCC
GAGCAGGGAT TCAGGGATTT TTTCAGCCAG CACGAATCAC TCCTCTCGGA CAGGAACAGT
CATAATCAGG CACTGATTTT TTATACCGAA AACATGCTGG CGAGTGTGAT GGGCTCGGCT
TCTGCCCGTC TGGTGATCTC CTGTGCGCTC AATGGACGAG ATATCGCCAT CAACGAAGTG
GCACAGCTTG TCGAAGATGC CTCCAGCCAT AGAATGGAGT TCAGCCGCTC GGTACTTCAC
AGCGCCATCG AAAACGCCAG CGAAGGCATA TCGGTAATAG ATAGCGATCT TAAATTGGTT
GCCTGGAATA AGCATTATCT GGAGCTGTTC GACTATCCGG ATGACCTCAT CTATATCGGC
TGTCCGGTGA AGCAGCTCAT CCAATACAAC CTGAGTCATG GGGGCAAGTT CAATAAGAAT
ATCGAACAGA AAGTCGAACG ACGACTGACG TTTTTACGTC AAGGTAGCCG CCATAGCACC
GAGCGGATCC AGGGTGATGG CAAGACTATT CGTATCGAGG GCAACCCCAT TCCCGATGGC
GGCTTTGTGA TGATATTCTC GGATATTACC ATGTACCGGG AAGCCGAAAA GTTACTGAAA
GAGAAAAATC TGGATCTCGA AGCCCGGGTC TATGAACGCA CCAGGAAGCT GGAAAAGGCG
AACCTTACCT TGGAACAAAC CAATGCCGAG CTTGCCGATG CGATTCAAAA AGTGGAGCAG
GCCCACCAGA AAAAGAGTCA ATATTTGAAG GCCTGCAGCC ACGACCTGTT GCAACCTCTG
TCTGCGGCCC GTCTCTTCTC CTCTGCCTTC GTACAGAGCA GTCAGCTATC AGAAAAACAG
AAACAGCAGA TAGGTTACAT CGATAACTCC CTTAAAGTGG CCAATGAGTT ACTGCTGGAT
CTCAATGAAA TTTCTCGCAT CGAAAGTGGT ACCCTGGTTC CTGAAATTGA GCGCTTTCCA
CTTCAGGAGG TTTTAGACTC CATCGTCGAT GAATACACCG CAATTTCCGC GAGCGCTAAC
GTGGAGTTCC GTCATATCGA TACCAGGCTC TGGGTCACAA GCGACAAGGT GATGTTAAGG
CGAATTTTGC AAAATCTGAT AAGTAATGCT TTCAGGTATG CCGGGGAGGG GAAAATTCTT
CTGGGCTGCC GCCGACATGG CAGTAAACTC AAGATTCAAG TCGTAGATAA TGGACCGGGG
ATCCCCCTTG ATAAGCAAGC GGTGATATTT GAACAATTTA CCCGCCTGCA GCCCTCCGGT
CATCAGGGGG TCAACGGGCT GGGTCTGGGC CTCAATATCG CTCAGGGACT GACCTCACTA
TTAAAGCAGC AGCTGACTCT CTCTTCTCGT CTCGGTCAAG GCAGTATCTT TAGTCTCACC
TTAGATATCG CCACGCCGAT TGCCGCGCAG ATAGAGAAGA GTGAAGCCGA CATCTTAACT
CTGCATGGCG TCAATGTGCT GTGTATCGAC AATGACCCCA ATGTGCTCGC CGGCATGACG
GAGCTACTCA GTGGCTGGAA ATGTAAGGTC TACGGCGCAA ACTCAGTGCA ACAGGCCAAG
CGGAAATTTG AAAAGCACGC CAGTGAGATA GATATCATGT TAGTGGACTA TCAGCTCGAT
GACAGTCTGG ATGGACTCGC CCTGATGGCA GAGCTACAAG GGTTATCTGA TCTGCCCCTG
CCCGGTATTT TGATCACGGC AACCATAGAT GAGGCCGTGG TTCAGCAAAC GAAGGCTATG
GGTTATGGCT ACCTACGCAA AATCATTAAG CCTATAGCAT TGAGGGCATT AATGAGTGCG
ACACTGGCTC AAAGCTTACG CAAAAACTAC TGTGCTTCGA GCGAGAAAGT GGCTTTATCC
AGCTGA
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| Protein sequence | MFPNWLLVTI SISYIGLLFL MAFLGDRYRD RLVNRQHTVI YALSLGVYCT SWGFLGTAGQ
AASNSFSYLP VYIAPILLFI FAWPFIQRLI RVSLKLNITS IADLLAARFG KSQLLAFIVT
LVALFGTLPY IALQLKAIVN SYEILRQDHL MSSWQIGGVV SIILAGFTII FGVRAIDVTE
RHPGMMLAIA FESFVKLVAY LTVGIFVSFF LFDSPLQIWN LANESLPAST EFNYPNLVSM
FGLLFIVLSA FLCLPRQFQV LIVELKEQKH AIWSRWTFPI YILVFAFFAT PLGQAGNLLY
GDSLKSDAYV LFLPAFNGQA WLGLFSFLGA ISAASSMVII STIALSTMLS NEVVFPTLFK
FSNIQSTNFH RFRSHLLSIR KALVLLVIFL SYGMFLLAPP DTLASLGEVA FGAIAQIGPT
LFAAFLWRRV TLVGAILGIS SGFSLWLVLN MLPQLGFYPH PLAGSEYSMT TMATLIGLLV
NILMLWLVSL LTRQSVHEQM QNEHFIQRPD IDNLPSGVQK NIKPKDLELL VARFVGEERA
EQGFRDFFSQ HESLLSDRNS HNQALIFYTE NMLASVMGSA SARLVISCAL NGRDIAINEV
AQLVEDASSH RMEFSRSVLH SAIENASEGI SVIDSDLKLV AWNKHYLELF DYPDDLIYIG
CPVKQLIQYN LSHGGKFNKN IEQKVERRLT FLRQGSRHST ERIQGDGKTI RIEGNPIPDG
GFVMIFSDIT MYREAEKLLK EKNLDLEARV YERTRKLEKA NLTLEQTNAE LADAIQKVEQ
AHQKKSQYLK ACSHDLLQPL SAARLFSSAF VQSSQLSEKQ KQQIGYIDNS LKVANELLLD
LNEISRIESG TLVPEIERFP LQEVLDSIVD EYTAISASAN VEFRHIDTRL WVTSDKVMLR
RILQNLISNA FRYAGEGKIL LGCRRHGSKL KIQVVDNGPG IPLDKQAVIF EQFTRLQPSG
HQGVNGLGLG LNIAQGLTSL LKQQLTLSSR LGQGSIFSLT LDIATPIAAQ IEKSEADILT
LHGVNVLCID NDPNVLAGMT ELLSGWKCKV YGANSVQQAK RKFEKHASEI DIMLVDYQLD
DSLDGLALMA ELQGLSDLPL PGILITATID EAVVQQTKAM GYGYLRKIIK PIALRALMSA
TLAQSLRKNY CASSEKVALS S
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