Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3138 |
Symbol | |
ID | 5611293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3787888 |
End bp | 3788928 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934076 |
Product | hypothetical protein |
Protein accession | YP_001474870 |
Protein GI | 157376270 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.363093 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAATTT CTAAAATTAA AAAAATTGCG ATAGCGGGTT CCATGTGTGT TTGCGCAAGC TCTGCCTTGG CGGGATACGA CTTCGAAGTG GGTGAAGATG GCAAGATTAG CTTCGGTGGT TACATCAAGG TTGATGCACG TTATGTCAGC GGTGATGTCG CCTATCGGGA TTTTTGGATA GGTACGGGTA CACCGCTGTC TGAGGACGCG TCGCAGTTCA GAATCTTTGC CAATGAGTCG CGATTCAATA CTAAATATGT TCATGGGGAT GTGACCGGCT TTATCGAGAT GGATTTTCTC GGAGGCGGCG GTAACCAGGT GGTCTCGAAC TCAGCCAACC CCCGTATTCG CCACGCTTTC ATCAAATACA AAGGGATCAC CGCAGGACAG ACCTGGACCA CCTTCATGAA TACCAGTGCC ATTCCTGAGA GCGCCGACTT TGCCGGCGCA ACGGTAGGTT TGGCCTTCAT TCGTCAGGGG CAGGTGCGTT TCGATGCAGG CAATTTCCAA GTCTCTATCG AAAACCCGGA GAGTGTCGGC GGCGATACCG CCAACGATGA TCTGCCCGAT GTTGTCGCCC GTTATAACCT AAAAGGTGAT TGGGGCAACG TGTCGTTATC GGCACTGGGC CGTAGCCTCA ATACGACAAT GGGTAATACA GAAACGGCTT TAGGTGGATC GATAGCCGGA CGTATTAAGA CCTTTGGTAA AGATGATTTC AGATTTCAGC TCCATCTGGG CGAAGTGGGC CGTTATGTCG GCGTAGGTAC CGCCTCAGAT CTTATCGGAG AGGAGGTTGA AAGTACCACT TCTTACCTTG CCGCATACCG TCACTACTGG ACAGATACTC TAAGAAGTAC CGTCTTGTAT GGCCGTGTTG AAACCGATAT CGCCGATGCA GAGCGCACTC AATGGAGTGT CAACCTGTTC CAAAACCTGA CTCCCCAACT TGCCGTCGGA TTCGAAGTCG GCAACTTTGA AATGGGCGAT AAGAATGTTG ACTCTGATTA TGCGCAGCTA TCGATGAGAT ACGCACTCTA A
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Protein sequence | MLISKIKKIA IAGSMCVCAS SALAGYDFEV GEDGKISFGG YIKVDARYVS GDVAYRDFWI GTGTPLSEDA SQFRIFANES RFNTKYVHGD VTGFIEMDFL GGGGNQVVSN SANPRIRHAF IKYKGITAGQ TWTTFMNTSA IPESADFAGA TVGLAFIRQG QVRFDAGNFQ VSIENPESVG GDTANDDLPD VVARYNLKGD WGNVSLSALG RSLNTTMGNT ETALGGSIAG RIKTFGKDDF RFQLHLGEVG RYVGVGTASD LIGEEVESTT SYLAAYRHYW TDTLRSTVLY GRVETDIADA ERTQWSVNLF QNLTPQLAVG FEVGNFEMGD KNVDSDYAQL SMRYAL
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