Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3066 |
Symbol | fliF |
ID | 5612014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3702073 |
End bp | 3703782 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934003 |
Product | flagellar MS-ring protein |
Protein accession | YP_001474798 |
Protein GI | 157376198 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGTAG GTACAAATTC CACATTGGCA AGCGATGGCA TTGCAGGTGG TGTACAAGAA GAAAACAAGT CTGGCGGTGT TGGCTCTTTT GGTGGAGTCG ATATGTTACG ACAGGTGACC ATGATCCTTG CACTTGCAAT CTGTCTTGCG CTTGCTGTAT TTGTCATGTT GTGGGCACAG GAACCCGAAT ACAGACCTTT GGGTAAAATG TCTACTCAAG AGATGATCCA AGTTTTGGAT GTACTCGATA AGAATAAGAT CAAGTATGAG ATAGATGTCG ATGTGGTGAA GGTACCCGAA GACAAGTATC AAGATGTAAA GTTGATGCTG ACTCGCGAAG GTGTTGATAG CGCAGCCAGT AGCAGCGATT ACCTGAGCCA AGACAGCGGG TTTGGCGTCA GCCAAAGAAT GGAGCAAGCC AGACTCAAAC ATAGCCAAGA GTTAAACTTG GCCAGAGCCA TCGAAGAATT AAGAAACGTG ACCCGCGCAA AAGTGATTTT AGCGATTCCT AAAGAGAATG TTTTTGCACG TAATCGCTCT AAGCCAAGTG CTACGGTTGT GATCAATGCT CGTCGTGGAA GTCTTGGTCA GGAAGAAGTT GATTCAATTG TTGATATTGT GGCATCTGCA GTTCAAGGAC TAGAGCCCAC ACGTGTGACT GTGACAGACT CTAATGGCAG ATTACTTAAC TCCGGCAGTC AGGATGCGGT CTCGGCTCGA GCTCGCCGCG AGCAAGAGTT GGTTCAACAA AAAGAGTCAG AATATCGAAA CAAAGTAGAA TCGATACTGA TGCCAATCTT GGGGCCAGAG AACTTTACCT CTCAAGTCGA TGTTAGCATG GACTTTACTT CCGTTGAGCA GACGGCTAAG CGATATAACC CTGATCTGCC AGCGCTTCGT AGTGAGATGA CAGTCGAGAA TAATTCGAAC GGTGCAACCA CGGGGGGCAT TCCAGGAGCC TTGTCTAACC AACCCCCTAT GGAAGCCAAT ATTCCACAAG AGGCGTTAAA TAATCAGGCC GACGCCGAGT CTAATTCATC TTCTGGCTCA TCTCATAGGG AAGCGACGAG AAACTTCGAA CTCGATACGA CTATCAGCCA TACAAGACAG CAGATTGGTG TGGTGAGACG AGTCAGTGTA TCTGTCGCCG TCGATTTTAA ATCCGGCAGT GCCGGCGAAG ATGGTCAAGT CAGTCGTGTG CCAAGAACCG AACAGGAATT ATCAAATATC CGTCGCCTGC TCGAAGGTGC GGTGGGCTTC ACTACCCAGC GTGGTGACAT AATCGAAGTC GTTACCGTTC CCTTCATGGA TCAGCTGATT GAAGACGTCC CCGCCCCCGA ATTGTGGGAG CAACCCTGGT TTTGGCGTGC AATTAAGTTA GCCCTGGGTG GCATTGTTAT CTTGGTGCTT ATTCTTGCGG TTGTCAGACC TATGTTAAAA CGACTCATCT ATCCCGATAG TGTTAAATTG CCTGATGAGC CTAGATTTGG TGATGAACTG GCCGAGATTG AAGATCAATA TGCTTCAGAT ACATTAGGTA TGTTGAACAG ACCAGAAGCA GAATACAGTT ACGCCGACGA TGGTTCAATT TTGATACCAG ATCTTCACAA AGATGATGAT ATGATTAAAG CAATTAGGGC ACTGGTAGCA AATGAGCCTG AACTGTCGAC ACAAGTCGTA AAGGGTTGGT TACAAGACAA TGAGCAATGA
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Protein sequence | MVVGTNSTLA SDGIAGGVQE ENKSGGVGSF GGVDMLRQVT MILALAICLA LAVFVMLWAQ EPEYRPLGKM STQEMIQVLD VLDKNKIKYE IDVDVVKVPE DKYQDVKLML TREGVDSAAS SSDYLSQDSG FGVSQRMEQA RLKHSQELNL ARAIEELRNV TRAKVILAIP KENVFARNRS KPSATVVINA RRGSLGQEEV DSIVDIVASA VQGLEPTRVT VTDSNGRLLN SGSQDAVSAR ARREQELVQQ KESEYRNKVE SILMPILGPE NFTSQVDVSM DFTSVEQTAK RYNPDLPALR SEMTVENNSN GATTGGIPGA LSNQPPMEAN IPQEALNNQA DAESNSSSGS SHREATRNFE LDTTISHTRQ QIGVVRRVSV SVAVDFKSGS AGEDGQVSRV PRTEQELSNI RRLLEGAVGF TTQRGDIIEV VTVPFMDQLI EDVPAPELWE QPWFWRAIKL ALGGIVILVL ILAVVRPMLK RLIYPDSVKL PDEPRFGDEL AEIEDQYASD TLGMLNRPEA EYSYADDGSI LIPDLHKDDD MIKAIRALVA NEPELSTQVV KGWLQDNEQ
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