| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3049 |
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| Symbol | fliA |
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| ID | 5612527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3685040 |
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| End bp | 3685759 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933986 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_001474781 |
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| Protein GI | 157376181 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0797202 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGTAAAG CCGCTGCGTA TACTTGTTTA GATAATAAAG CCTCAATAGT TGAACAGTAT
GCACCGTTGG TTAAAAAGAT TGCCCACCAT CTGTTAGCGC GTTTACCGGC ATCGGTTCAA
CTCGATGACC TGTTGCAAGC CGGAATGATG GGGCTTCTCG AAGCTTCTTC GAAGTTTGAT
GGTAGCAAAG GGGCAAAATT TGAAACTTTT GCAGGCATTC GGATCCGTGG TTCGATGCTT
GATGAGATCC GTCGGGGAGA CTGGGTTCCG CGTTCGGTTC ATCGTAATCA AAGGCGCGTT
GCTCAGGTTA TCGATGAATT AGGGCAAGAG CTAGGCAGAG ATGCCGTTGA CAGCGAAATT
GCACAGCGAC TTGATATGTC GCTCGATGAG TACCATCATA TTCTAAATGA TGTTTCAGTG
GGTAAAGTTG TTGGTATCGA AGATTTAGGT GTGTCGGTTG ATGTTGTTAG CCATGAAGAG
GTTCAGCAGG ACGATATATT TGAGTCGATA GCAGACGTAG AATTTCATAA GGCATTAGTG
GAAGCTATCA AGCTTTTGCC TGAGAGAGAT GGATTAGTTT TGTCGCTTTA TTATGACGAA
GCACTGAATT TAAAAGAAAT TGGGGCCATT CTTGAAGTTA GCGAGTCGCG GGTAAGCCAG
ATATTGAGTC AGGCGATGCT CAGACTTAAA GCTAAACTTA AGCATTGGAC AACAAAATAA
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| Protein sequence | MSKAAAYTCL DNKASIVEQY APLVKKIAHH LLARLPASVQ LDDLLQAGMM GLLEASSKFD
GSKGAKFETF AGIRIRGSML DEIRRGDWVP RSVHRNQRRV AQVIDELGQE LGRDAVDSEI
AQRLDMSLDE YHHILNDVSV GKVVGIEDLG VSVDVVSHEE VQQDDIFESI ADVEFHKALV
EAIKLLPERD GLVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK AKLKHWTTK
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