| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3012 |
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| Symbol | |
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| ID | 5611466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3643747 |
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| End bp | 3644292 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640933949 |
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| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
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| Protein accession | YP_001474744 |
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| Protein GI | 157376144 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
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| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.481041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00156221 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTA TTAATACAAC CATTCCAGAT GTAAAAATCA TCGAACCACA AGTGTTTGGT
GATGAACGTG GTTTCTTTAT GGAGACATTT AGAACTTCTT TATTTAAAGA AAAATGCGGT
GATATAGAGT TTGTGCAAGA AAACCACAGT AAATCGAATC ACGGTATTTT ACGTGGTCTG
CATTACCAAA CAGAGCAAAC CCAAGGTAAA TTAGTTCGCG TTACCAAAGG CGAAGTTTTT
GATGTCGCCG TCGATTTAAG AAAAGACTCC CCAACCTATG GACAATGGGT TGGAGAAATT
CTGTCTGCTG AAAATAAACG CCAGTTATGG GTGCCAGCAG GTTTTGCTCA TGGCTTTTAT
GTGATGAGTG AAGACGCCGA GTTTATGTAC AAATGCACAG ATTATTATAA CCCAAGTGCA
GAGGTATCAA TTAAGTGGGA TGATCCAACA CTTAATGTTC AGTGGCCATG GGTAGATAAA
CAAGCACCAT TACTGTCTGA AAAAGATAAA AACGGATTAA GCTTTGAACT GGCTCCAAAG
TTCTAA
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| Protein sequence | MKFINTTIPD VKIIEPQVFG DERGFFMETF RTSLFKEKCG DIEFVQENHS KSNHGILRGL
HYQTEQTQGK LVRVTKGEVF DVAVDLRKDS PTYGQWVGEI LSAENKRQLW VPAGFAHGFY
VMSEDAEFMY KCTDYYNPSA EVSIKWDDPT LNVQWPWVDK QAPLLSEKDK NGLSFELAPK
F
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