Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2983 |
Symbol | |
ID | 5610538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3612206 |
End bp | 3613489 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933923 |
Product | polysaccharide biosynthesis protein |
Protein accession | YP_001474718 |
Protein GI | 157376118 |
COG category | [R] General function prediction only |
COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCCTTCCG GAGTGCTCAA CAATGCAAGT TGGCTTCTGC TCGAAAAAGG CTTGCTATTA GGCAGTGGCT TTCTATTTAC TATCGTTTTA ACACGGTATT GGTCTGTGTC GGAGTTAGGG GATTACCAGT ACCTGTTAGC TTTAGTGGCG CTTCTGGTTC CATTTTCTAA TCTTGGGTTA AACTCACTGG TGAGTCGAGA GCTCGTGACC AGAGCCGAGC ATACCGATGT GATTATGGGG ACGGCTGTTG TTCTCAGGTT GCTAGGGGCG CTACTCGGCG GGGTCATATT TAGTCTACTA TCGATTTGGT TGGTAGCTCC CACCCTACAA CCTCTATTTT TCGTCTTGTT ATTCGCGCAA TTATCCCATG CATTTGGGGT CTTCGATTAC TATTTTGAAG CAAAAGTACA ATCGAGAGTT TCGGCAATTC TGAGGACCTG TGTAGGCCTT AGTTTTATGG CGGTTAAACT TTCATGTGTA GTGCAAGGTG CTGACCTTTA TACAGTATTG TTGCTTACCG TCGTAGAATG GGTAGTACTC AGTTTGATGT GGTTATTGGT ATATCAGCTT TATCACAAGC GTCTCAAAGA GATGTCTTGG TGCTCTGCCC AAGCTCGAAG ATACCTTAGT CGCTGCGGTT GGCTAATACT CTCCAGTATC GCTGCAATCG TCTATCTAAA GATTGATCAA GTCATGTTAG GCTCTCTGCA TTCCAGTGAA TCAGTCGCTT TTTATAGTCT TGCGAGTCGA TTATCTGAGG TCTGGTATCT GGTACCAGGA ATCGTTGTAG CTTCATTTTA TCCCTCTTTA ATCAAAGCTA AAGAGCAGAA TGAAGACTAC CAGGGATCAT TGCAGCGTCT ATCTGATAGC CTTTGTTGGG CCGCGATTAC TATTGCGATT TTGATGAGTG TTATTGCTCC CGTTCTCGTG CCGTTGCTAT TTGGTGATAC TTACCTGCCT GTAGTTGCCA TATTGCAGAT CCATATCTGG GCGGGCGTGT TTATTTTTAT GAGAGCGTTA TTTAGTAAGT GGCTCCTCAT TGAGGATCTA CCCAAATATT CTTTGGTTAC CCACGGAAGT GGCGCCATTA TTAACTTATT ACTGAATAGC CTACTCATAC CTGAGCATGG TGCGTTAGGT GCAGCTTGGG CTACGCTGGC ATCCTATGCG GTGGCTTCAT ATTTAGGTTT GTTTATTTTT CCTAAGACCC GCTGTATGGG AGTGTTGATG ACGTACTCCC TATTGGCACC TGTGTGTAGG TTTAGATTGA GAAAGAGGGG CTAA
|
Protein sequence | MPSGVLNNAS WLLLEKGLLL GSGFLFTIVL TRYWSVSELG DYQYLLALVA LLVPFSNLGL NSLVSRELVT RAEHTDVIMG TAVVLRLLGA LLGGVIFSLL SIWLVAPTLQ PLFFVLLFAQ LSHAFGVFDY YFEAKVQSRV SAILRTCVGL SFMAVKLSCV VQGADLYTVL LLTVVEWVVL SLMWLLVYQL YHKRLKEMSW CSAQARRYLS RCGWLILSSI AAIVYLKIDQ VMLGSLHSSE SVAFYSLASR LSEVWYLVPG IVVASFYPSL IKAKEQNEDY QGSLQRLSDS LCWAAITIAI LMSVIAPVLV PLLFGDTYLP VVAILQIHIW AGVFIFMRAL FSKWLLIEDL PKYSLVTHGS GAIINLLLNS LLIPEHGALG AAWATLASYA VASYLGLFIF PKTRCMGVLM TYSLLAPVCR FRLRKRG
|
| |