| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2949 |
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| Symbol | |
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| ID | 5610672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3571540 |
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| End bp | 3572907 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933889 |
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| Product | polysaccharide biosynthesis protein |
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| Protein accession | YP_001474684 |
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| Protein GI | 157376084 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.484076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATG CATCCAAGCA ATCATCTGAT ATTGAACAAC CAGCCAAAAG CACTTTCTCA
ATGAGTCTTT TCTGGTTAGG TTCGGCTCAG GTTCTTGGGC GCATCGTAAG ATTAGCTTCC
AGCATCATTT TAGCACGCTT ATTGACGCCA GAGGTCTTCG GGCAAGTCGC TATTATTCTC
GCCTGTTTCG AGCTTATCTG TACCCCGACA AGACGAATCA CTTCTGCCGC ATTGATAAAG
ATGGACGATG ATTCGTTATT CGCTTCACTC CCCAATGCGA ACAGAACAAA TTGGATTGCC
GCTATAACCG CCTTCGTTGC CATGAGCTTA CTCAGTTGGC CCCTCGCCTT CTTCAACCAA
GATTCGACAC TCATCGCGCC TATGATACTC ATGGCAACAA GCTATCTTTT ACTCCCCTTC
GGTATGCTCT ACGCCGCTAT CAATCTCAGA GCCAACAACA TGCGACGCGT TGGTCGCGCA
ATTTTGTGGC AAACCATCAC AGATGGCATT CTTACCGCTA TCCTTGCGCT ATCAGGGCTT
GGAATTTGGG CCATTATTCT GCCTAAGGTG TTGGTTATTT TTGTCTGGAT TGCCATACAC
AGATATCACA ACCCGCTCTT TCAAGCTCAA TCACTCACCA AACCCGACCA GGCTAAACCC
CGCTCAGCAT GGACTATCAC ACAGATGCTG CGCTTTGGTT CTCAGGTCGG TTTAAGCGAT
TTTAGTATCA CATTAAGACA AAATATCGAT TACCTCCTCG TCGGTTATTT TCTTGGCATC
GAGGCGCTGG GGATATACTT TTTCGCCTTC AATACCAGCT TAGGGATCAG TTTAGGGATC
ATACAAAGTT ATGGTACGGC ACTGTATTCG CACCTATGCG ATAAAAGTAA TCAAGCTTGG
GATAGCATGG AAGTGGAACT TCAGAAACGC TATGTCCATT CGCTTAAGCT TATCCTGAAG
ATCACGGTTC CCGTTATCGC GCTGCAATCG ATACTCGCCC CCATCTATCT TCCTTTCGTC
TACGGAAGCC ACTGGATAGA AGCAGGCGCA CTTCCTGTAT TTGTTTTACT TTGCTTAAGC
GGGCTCGTCA GACCTATCGG AGAGGCGACA AGTCAATTAC TCATCAGCAT AGGTGAGAGT
AGATTGAACC TCTCATTTAA CCTGGGCTTT ACCTTGCTGT TGGCTATCAC CATTAGCGTA
TGCAGCCAGT GGGGCTTAAC AGCTATAGCC CTGGGGATCT TAGTGATCCA CCTGATTGCA
ATGCCGGCAT TTAATCTCTA TATCCATCAC TTCATTCTGA GCTCTCGAAA AGGAGCTAAA
CAAGATCAAC TCAAGGGTTT TAACCGGGAG GTTCACCATG ACGCCTAA
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| Protein sequence | MNNASKQSSD IEQPAKSTFS MSLFWLGSAQ VLGRIVRLAS SIILARLLTP EVFGQVAIIL
ACFELICTPT RRITSAALIK MDDDSLFASL PNANRTNWIA AITAFVAMSL LSWPLAFFNQ
DSTLIAPMIL MATSYLLLPF GMLYAAINLR ANNMRRVGRA ILWQTITDGI LTAILALSGL
GIWAIILPKV LVIFVWIAIH RYHNPLFQAQ SLTKPDQAKP RSAWTITQML RFGSQVGLSD
FSITLRQNID YLLVGYFLGI EALGIYFFAF NTSLGISLGI IQSYGTALYS HLCDKSNQAW
DSMEVELQKR YVHSLKLILK ITVPVIALQS ILAPIYLPFV YGSHWIEAGA LPVFVLLCLS
GLVRPIGEAT SQLLISIGES RLNLSFNLGF TLLLAITISV CSQWGLTAIA LGILVIHLIA
MPAFNLYIHH FILSSRKGAK QDQLKGFNRE VHHDA
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