Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2942 |
Symbol | |
ID | 5610790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3561925 |
End bp | 3562845 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933882 |
Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
Protein accession | YP_001474677 |
Protein GI | 157376077 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTT CACAGTTCAG TGTCCAGGTT TTGTTTCTAT CATGTTTGTT GAGTGTCACT GGAAGTGCTT ATGGTGAAAA TGACAAACAT TCACACAATA GCAATGAGTT AGGTGCTCCT CGCACGATAA CATTTGGTGT TGTTCCCCAG CAGGCTGCTA GCACACTCGC GCGCTTATGG TCTCCGGTGT TGGCTGAATT GTCGCAAAAT GCAAATTTCA ATTTGCGATT TGCAACGGCG CCGGACATTC CAACTTTTGA AAAGCGGCTC GCTTCGGGTG AATACGATGT CGCCTATATG AACCCCTACC ACTACACGGT ATTTCATGAA GCTCCCGGTT ATCAAGCCTT GGTCAAGCAG AAAGGTAAGC AGATCAAAGG CATTATTGTG GTTCGCAAAG ACTCACCTAT CCTCACTATC GATGATTTGA ATAATAAAGA TGTAGTCTTT CCCGCGCCCG CGGCCTTTGC CGCCAGTGTT CTCCCCAGAG CAAACTTAAA GGTAAGAGGG CTTGAGAATC GGGTTAAATA TGTCGGTTCT CATGATTCTG TTTACCTCGC GGTGGCGCAG GGCTTGGTAG ATGCCGGAGG GGGAGTAAAA AGAACCTTCA AGACGATGGA TAAGGCGACG ACAAGCCAAC TTAGAGTTTT ATGGGAGACC CCGGGTTATA CCCCTCATGC CATTGCCGTT CATCCAAGAG TTCCGGCAGG TATTGTTGAG GAACTTAGAC AAGGTTTTGT CGAGTTATCA TCATCTTCCC AAGGTGCTGA AGTGCTAAAT GTATTGGGCC TTAAAAGTTT TGAGGCTGCT AAAAATAGCG ATTGGGATGA TGTACGCTCG CTGGGTTTAG GTACGTTTGA AAAACCTTTA GAAAACTCCA GTGACATAGC TGATAAGCCG TCAGTGAAAG GAGAGCTGTA G
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Protein sequence | MKISQFSVQV LFLSCLLSVT GSAYGENDKH SHNSNELGAP RTITFGVVPQ QAASTLARLW SPVLAELSQN ANFNLRFATA PDIPTFEKRL ASGEYDVAYM NPYHYTVFHE APGYQALVKQ KGKQIKGIIV VRKDSPILTI DDLNNKDVVF PAPAAFAASV LPRANLKVRG LENRVKYVGS HDSVYLAVAQ GLVDAGGGVK RTFKTMDKAT TSQLRVLWET PGYTPHAIAV HPRVPAGIVE ELRQGFVELS SSSQGAEVLN VLGLKSFEAA KNSDWDDVRS LGLGTFEKPL ENSSDIADKP SVKGEL
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