Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2928 |
Symbol | |
ID | 5609860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3544948 |
End bp | 3546486 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933868 |
Product | transcriptional regulator, TyrR |
Protein accession | YP_001474663 |
Protein GI | 157376063 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.422498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTTG AAGTATGTTG CTTGGACCGT GTTGGTCTGG CGAAAGATAT TTTGATGGTC TTGGAAGGTT ATGGCATTAA CTTGATTGCT ATCGATGCCA GTAATCAGGG GTTTCTCTAT CTGCAATTTG CTGAGGTTAA TTTCGATACG CTCAGTGAAT TGTTGCCCTC GATCAGAAAG GTTGAAGGCG TTCATGATGT CCGTACCGTC TCCTTTATGC CATCGGAGCA AGAGCACTAC GCCTTGAAAA CACTTTTAAA AACACTGCCA GACTCGGTGT TTTCTATCGA TGTGAAAGGG CGCGTTCGGA TCGTTAATGA GTCCGCTCTT ATGACCGTGG GCATGAGCGA GCATGAAATA CTCGATGAGC CACTCAACCA TTGGGTTCAG GGCTTCAATT TCAGTCGTTG GCTAAGTGAA ACCTTAGTGC TTGCCCAAGC GACGCGCGTC AACATAGGTC AAAATGAATA TTTGGCTGAG ATGTTGCCTA TTTATCTCCC GGATGAGAGT GATAAATCCA TTCTTGCCGG CGCCGTCGTC TCACTTAAAT CACCCGCCAG GGTCGGTAAG CAGTTTAACG CTTTACAGAG TCAAACAACG GGCTTTGAAA GCGTACTGGC CACCAGTGAC AAGATGAAAG AAGTTCTGGT TCAGGCCAGG CGCATGGCGC AACTCGATGC CCCTTTGCTT ATTACCGGTG AAACCGGAAC GGGGAAAGAG CTGATGGCAC GAGCGTGTCA TGATGCCAGC ATGCGTAGAG AACACCCCTT CATTGCGATT AATTGCGCCG CCTTACCAGA CAGCGCCGCA GAGGAGGAGC TCTTTGGCTT TGTTAGCAAC GGAGAGATAG TCAAGAGGGG CTTCTTCGAG GAGGGCAAAG GCGGAACGGT TTTTCTCGAT GAGATTGCCG AGATGTCAAA ATCTGCCCAG GTAAAGTTAC TGCGTTTACT GCAGGATGGC ACCTTCAGAC GCTTGGGAGA GGATAGAGAG GTTAGGGCCG ATGTCAGGAT CATCTGTTCG ACTCAGAAAA ACCTCGCCGA ACTGTGCCAA ACGGGAGAGT TCAGAGAAGA TCTCTACTAT CGTATTCATG TATTGAGCTT CCATCTGCCA TCGCTTCGGG AACGAAAAGT CGATGTCATC CCCTTAACCG AAATGTTTTT AGAACATTAC AGTCAACAAC TGTCGATCCC AATCAGACGT ATTTCGGCCC AGTGTCGTGA ACATCTGCTC AACTATGCCT GGCCCGGTAA TGTCAGGCAG CTTAAAAATG CCATCTTTCG GGCGGTATCC ATGTGGGATG GATCTGCCGA GTTATCTGTG GAGCAGCTGA AGCTTCCCTC CTACGCCGAA GGATTCGGTT ATTTCGATCA CCAATTCGAA GGAAGCTTAG ATCAAGCCAT GAAGCAGTTC GAATCGAGCC TGCTGAGAAG GCTGTATCCG GCTTACCCAA GTACACGTCA GTTAGCCAAG AAGCTAGGCG TATCCCATAC GGCGATTGCC AATAAATTGC GAGAATATAA GATCAGCAAG CAAAAATAG
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Protein sequence | MRLEVCCLDR VGLAKDILMV LEGYGINLIA IDASNQGFLY LQFAEVNFDT LSELLPSIRK VEGVHDVRTV SFMPSEQEHY ALKTLLKTLP DSVFSIDVKG RVRIVNESAL MTVGMSEHEI LDEPLNHWVQ GFNFSRWLSE TLVLAQATRV NIGQNEYLAE MLPIYLPDES DKSILAGAVV SLKSPARVGK QFNALQSQTT GFESVLATSD KMKEVLVQAR RMAQLDAPLL ITGETGTGKE LMARACHDAS MRREHPFIAI NCAALPDSAA EEELFGFVSN GEIVKRGFFE EGKGGTVFLD EIAEMSKSAQ VKLLRLLQDG TFRRLGEDRE VRADVRIICS TQKNLAELCQ TGEFREDLYY RIHVLSFHLP SLRERKVDVI PLTEMFLEHY SQQLSIPIRR ISAQCREHLL NYAWPGNVRQ LKNAIFRAVS MWDGSAELSV EQLKLPSYAE GFGYFDHQFE GSLDQAMKQF ESSLLRRLYP AYPSTRQLAK KLGVSHTAIA NKLREYKISK QK
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