Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2912 |
Symbol | |
ID | 5610024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3522652 |
End bp | 3524019 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933852 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001474647 |
Protein GI | 157376047 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTCA ATAATTTGGA TAACATCAAA GTGCTCATCG TCGATGATGA GCCTTTAATC GGTTCAGCTC TAATGCAGCT ATTTGAATTA GAAGGCATTC CAGCATTTGC CACTTCTACG CCCAAGAGCT TACCGGAACA GATCCACCTG AATTGGCCCG GTGTCGTCAT TACTGACGTC AATATGCCTC AGCTTGATGG CATCTCCCTG ATGCGTAACC TACAAACAAA AGATAAAGAT CTGCCCATTA TACTACTCAC AGGCTTCGGC GATATAGCCA TGGCAGTGCA AGCACTTAAA CAAGGTGCCT ACGATTTTCT GGAAAAACCA TTCAACAATG AACATATTCT GGATGTGGTG AAACGGGCCT TAGAAAAAAG AGAGTTAACC CTAGAAAACC GAAAGCTGAA GAGAGAACTG GAATCACAGA GTCTGCCGGG TCCAAGAATA TTGGGCCACA GCCCCGGCAT TGAACAGATG AAGCACATCA TACATCAGGT TATCGATATG CCAGCCGATG TGCTCATTGA GGGGGAAACC GGAACGGGGA AAGAGTTAGT CGCACGCTAC CTGCACGATC ACAGCGTCCG TCATCAGGCT AACTTTGTGG CCATAAACTG CGGGGCGATA CCGGAAACTA TCATAGAAAG TGAGTTATTC GGGGCTGAAT CAGGGGCATT TACCGGTGCC GATAAAACCC GTATCGGTAA ATTCGAATAT GCCAATGGTG GAACCATCTT TCTCGATGAG ATTGAAAGCA CGCCGCTCTC ATTGCAGATA AAACTGCTAA GAGTCCTGGA AGATAGAAAA GTCGAACGAC TCGGTTCAAA CAGGAGTATT GAACTCGATA TTCGGGTCAT TGCCGCCACT AAGGTCGACT TGGCGCAATT GTGTAAAACC GGTGAGTTCA GGCAGGACCT GCTTTACCGA TTAAACTTAG TCACGGTGCC TATTCCTGCT CTGCGAGAGA GGCGCGAAGA TATCGGTCTG CTGTTTTTAC ATTTCGCTCG CGTTGCCTCA TCCCGTTACC ATAAGGCTCT GATCGCACTC AACGCGCAGC AGATGACTCA ACTGGCCTCA CATGATTGGC CCGGAAATGT AAGAGAGCTC AGAAATTTGG CCGAACGCTA TGTGCTCCTC GGAGGAGAAG CCGCTTTTGC CACATCAATA AACAGCTCTG TAAATCTCAA CTGTGGTATG TCGCTGCAAC AAAGGGTGGA GTTTTTTGAA CGACTCCTGA TTGAAGAGGC GCTGAGTCAC AACAAGGGCA GCATCAAGCT CACCATGGAA CAACTGGAAG TGCCTCGTAA GACACTCTAT GACAAGATGC AAAAATATGA ACTAGACCGT AAGCGCTTCA TTCAATAA
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Protein sequence | MNLNNLDNIK VLIVDDEPLI GSALMQLFEL EGIPAFATST PKSLPEQIHL NWPGVVITDV NMPQLDGISL MRNLQTKDKD LPIILLTGFG DIAMAVQALK QGAYDFLEKP FNNEHILDVV KRALEKRELT LENRKLKREL ESQSLPGPRI LGHSPGIEQM KHIIHQVIDM PADVLIEGET GTGKELVARY LHDHSVRHQA NFVAINCGAI PETIIESELF GAESGAFTGA DKTRIGKFEY ANGGTIFLDE IESTPLSLQI KLLRVLEDRK VERLGSNRSI ELDIRVIAAT KVDLAQLCKT GEFRQDLLYR LNLVTVPIPA LRERREDIGL LFLHFARVAS SRYHKALIAL NAQQMTQLAS HDWPGNVREL RNLAERYVLL GGEAAFATSI NSSVNLNCGM SLQQRVEFFE RLLIEEALSH NKGSIKLTME QLEVPRKTLY DKMQKYELDR KRFIQ
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