| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2899 |
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| Symbol | |
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| ID | 5613815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3502489 |
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| End bp | 3503376 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933818 |
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| Product | response regulator receiver modulated CheW protein |
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| Protein accession | YP_001474634 |
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| Protein GI | 157376034 |
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| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG0835] Chemotaxis signal transduction protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.715975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00931868 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAGTA AGGCCAACCA ATCCCAAGGC TTATTGCTTT TTCGTCTGTC TCAGAGACAA
CTATTCGCCC TGGGCACGCT AAAGATCCGG GAACTTGTTC CCTATACTCC TTTAAGTGTA
ATACCTCAGT CTCACCCTAC GATCTTAGGG GCTGCGACTA TTCGTGGTAA TACCATTCCT
GTTATCGATA TGGCTGCAGC GGTTGGCTAT CCTTCTCTTA CGAGTGAAGA GTTGAAATCG
AGTTATATCG TCATCACCGA CTGCCAACGC ATGGTTATCG GTTTTTTAGT TCGTGCCATC
GATAAAATTA TTGAGTGTAA CTGGCGAGAT ATCGAGTCTC CTCCAAATAA TTTAGGTCCC
AATGCCTATT TGACCGGGGT GACTCGCTTT GATGACCAAT TGGTGCAACT ACTCGATGTT
GAACTACTAT TGTCCAAGGT CTTCCCACCA AGTCCTGAGA TGAATCGCGC GATTTTGACT
GATGTTCAAC GTGAGAAACT CAAGCCGCTG AGTATTTTGT TAGTCGATGA CTCTAAGGTT
GCCCGTAAGC AGCTGTCTGA TGCCCTCGAT AGTATCAATA TTCCTTATCA AGTGACCTCT
GATGGACGTG ATGCGCTATC AATCATGGAG AAAGCAGCAA GTGAGGGAAC GCCTATCGAT
CTGCTGGTCA GTGATATTGA GATGCCAGGA TTAGACGGCT ATGAACTCGC TTTCGAAGTA
AAAAATACGC CGGCGTTGGA CTCAGCTTAT ATTATCTTGC ATACATCACT CTCAAGTGAG
ATCAGCGTAA GTCAGGCTCA TCAGGTTGGT GCGAATGAGG CGTTAACTAA ATTTGATGCC
CATGAGCTGA TTAGTGCTAT GTTACGAGGC GCAGAGTCCA AGGAGTAG
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| Protein sequence | MKSKANQSQG LLLFRLSQRQ LFALGTLKIR ELVPYTPLSV IPQSHPTILG AATIRGNTIP
VIDMAAAVGY PSLTSEELKS SYIVITDCQR MVIGFLVRAI DKIIECNWRD IESPPNNLGP
NAYLTGVTRF DDQLVQLLDV ELLLSKVFPP SPEMNRAILT DVQREKLKPL SILLVDDSKV
ARKQLSDALD SINIPYQVTS DGRDALSIME KAASEGTPID LLVSDIEMPG LDGYELAFEV
KNTPALDSAY IILHTSLSSE ISVSQAHQVG ANEALTKFDA HELISAMLRG AESKE
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