| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2892 |
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| Symbol | tgt |
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| ID | 5611244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3495727 |
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| End bp | 3496860 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933811 |
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| Product | queuine tRNA-ribosyltransferase |
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| Protein accession | YP_001474627 |
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| Protein GI | 157376027 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
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| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.103545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000645764 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTG AATTAGATAC AACTCAAGGT CGCGCTCGTC GTGGCCGTTT AGTCTTTGAG
CGAGGCACGG TAGAAACGCC TGCATTTATG CCTGTTGGTA CCTACGGTAC CGTAAAGGGG
ATGACGCCTG AAGAGGTTCG TGCAACCGGT GCAGATATCC TTCTGGGGAA CACATTCCAT
TTGTGGCTTC GTCCTGGCGA AGAGATCATG CGTAAACATG GTGATCTTCA TGACTTCATG
AACTGGCAAA GACCTATTTT GACAGACTCT GGCGGATTCC AGGTATTCAG CCTGGGTGAT
ATTCGAAAAA TCACCGAAGA GGGGGTTCAT TTCCGCTCGC CGATTAATGG TGAAAAAATC
TTTTTAGATC CTGAAAAGTC TATGCAGATC CAGAACTCTC TTGGCTCTGA TGTCGTGATG
ATTTTCGATG AATGTACACC GTATCCAGCG ACAGAAGACG AAGCACGTAA ATCGATGCAG
ATGTCTCTTC GTTGGGCACA ACGTTCACGC GATGAGTTTG ATAAGCTTGA AAACCCTAAT
TCTCTGTTTG GTATCATTCA GGGTGGGGTT TATGAAGATC TGCGTGATGA AAGTCTTAAA
GGGCTTGTCG ATATTGGATT TGACGGTTAT GCCGTTGGTG GTTTGGCTGT GGGTGAGCCT
AAAGCTGACA TGCATCGCAT TCTTGAGCAT ACATGTCCTC AAATCCCAAC AGATAAACCG
CGTTACTTGA TGGGGGTCGG TAAGCCGGAA GATTTAGTTG AAGGTGTACG TCGCGGCGTC
GACATGTTCG ATTGTGTCAT GCCTACACGT AATGCTCGAA ATGGTCATCT GTTTACCACT
GAAGGCGTTA TTAAGATACG TAATGCACGT CATCGTGATG ACACTTCACC ACTCGATGAT
AAATGTGATT GTTATACCTG TAAGAACTAC TCTCGGGCAT ACCTGTACCA TTTAGATCGT
TGTAATGAAA TTTTAGGTGC TCGTTTAAAC ACCATTCATA ACCTTAGGTA TTACCAAAAG
TTGATGGAAG GTTTGCGCGG TGCGATCGAG ACAGGTACAT TAGACGCCTT CGTTGAGGAG
TTCTATACCA GTCAAGGACG CGAAGTCCCT GAAGTTCCTG AATTAACCGA TTAA
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| Protein sequence | MKFELDTTQG RARRGRLVFE RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH
LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI
FLDPEKSMQI QNSLGSDVVM IFDECTPYPA TEDEARKSMQ MSLRWAQRSR DEFDKLENPN
SLFGIIQGGV YEDLRDESLK GLVDIGFDGY AVGGLAVGEP KADMHRILEH TCPQIPTDKP
RYLMGVGKPE DLVEGVRRGV DMFDCVMPTR NARNGHLFTT EGVIKIRNAR HRDDTSPLDD
KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQK LMEGLRGAIE TGTLDAFVEE
FYTSQGREVP EVPELTD
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