| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2865 |
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| Symbol | |
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| ID | 5613343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3466109 |
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| End bp | 3472750 |
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| Gene Length | 6642 bp |
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| Protein Length | 2213 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933784 |
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| Product | Signal transduction histidine kinase-like protein |
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| Protein accession | YP_001474600 |
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| Protein GI | 157376000 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000726448 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTCA TTACCCGGTT TTTTTCTTTT CTGCTTCTTC TATGTATCAC AAGCGCATTT
TGTAATGCAG AAACTATAAA GGTTGGGTTT GGTTATGGAA AGCCTCCCTT TGTATTTGCA
TCAACCCCAG AGGGACAATC AGAACCGAGA GGAATAGAGG TTGATATTAT GCGTGAAGCA
CTCGCTTTGC GCGGACATGA TTTGGAAGTT CACTACTTCT CTAATAACAA TCTTGTTGAA
CAGTTGCGGC AGGGAAATAT TGATGCGGCT ACAACTATTC CTTCTGAACA AAATTCATCT
GTTTACTATT CTAATCAAGT TATCTACTTC TGGAATTATG CGGTAACGCA ACCCGAAGAC
AGAACCACAT TATCTTCTAT CGATGAGCTG AAGAGCAGGA AAGTGCTTTC ATGGCAAGGT
GCCAGTAAAG ACCTGGGTAA AAGCTTTGAA CAAGCCATTC CACAAATGAA CTTTTATCGC
GAGGTCGAGG ATCAATCAGA GCAAGTATTA CTGTTCTTAC AAAAAAAGGC TGATACGCTC
GTTATTGACT GGAGTATTTT TTCGTATTGG GCGCGGTATT TTGGTTATGA GCCGGAACGC
TATAATCAAT ACAATATTTT TGGCGGTAAG ACTTGGTTTT CAGTTGGATT TTCAGATAAA
TCATTGAGAG ATGACTTCAG TCAGGGGCTA TCACAATTAA AATCAAATGG GCAATACCAG
AAAATTTATG ACCGATTATG GTCAGCCAGT AATCTGGAAG ATAACAGTAA TAAGTCAGTG
CTTCATTTGA CAGCAGATGA ACAAACTTGG TTGGATAACC ATCCTAACAT CCGTTTGGGT
ATTGACCAGA ACTATCCGCC TTTTGACTTC ATTGGAGATA GAGGCAACTA TTCCGGGATC
TCTGCGGACT ACCTTGCGCT GATTAATGAG CGCCTTGGGA CTGATATGCG TGTCATTTCT
GGCTTGAATT GGACTGATGT CATTGCGGGG GCTCAGAGCG GCGATATTGA TGTCATCTCC
ACAATTGTGG AAACGAAAGA ACGAAGTGCT TATCTTAACT TTACTCGCCC CTACATTAGC
TTTCCGACTA TTTTTTTGAC CAGGAAAGAT CAAGAGCCAG TGAATGCTTT TCATGATTTG
AACCGTGGAA AGCTGGCAAT GGTGAAAGAT TTTTTTTATG AGGAGATGAT CCTTAAAAAC
TATCCGGAAA TAGAGCCATA TTTTGTCAAC TCTCCTTTAG AAGCAATACG AGCTCTAGAT
AACGGTAAAG TGGATGCTGC AATTGTTAAT TATGCCGTGG CTAACCACCT TATTCTGAAA
TATGACTTAA CCTCGATTAG AGTTGATGCT GAAACGCAAC TTGAAAGAAC ATTTTTTAGT
TTCGGTGTTC GTAAAGATTG GCCTGAACTT CTCTCTGTCC TTAATAAGGT GCTCGCTTCT
ATCGATGAGG AAAAACATAA GCAGATAACA GAACGATGGA TCGCTAGACC TTCAACTGTA
AGCCAAGTTA CTGATGAAAT TGACTTAACT GCTAAAGAAA AAGCATGGGT TGCAAGCAAT
CCTGTTGTAC GAGTCTCAGG AGATATTAGT TGGCCACCAT TTAATTTTAA AAGGAATGGT
GTGACACAAG GGTTCTCTAT CGACTATATG AACCTGATAG CGAAAAAGGC AGGGCTATCT
ATTGAATATG TTGAAGGGCC TACATGGGGG GAATTTCTGC TGATGATGAG AGATGGCTCT
CTCGATGTTA TGTTAGATAT TGTTAAAACC CCTGAGCGTG AAAAATACTT ACTTTACACT
AAACCCTATG CTGATAACCC CAATGCGATC CTGAGCAAGA AGAGTATGCC TTATCGCTCT
TTAGAAGCCT TGTTTGGCAA AACGGTTGCG GTTACTAAGG GATTTTTTTA TGAAGAGATT
TTGAGTAGAG AATATCCACA AATTAAAATA CTTCCTCTTG AGAATACATA TCAAACCATG
ATTGCTGTCA GTGTTGGGGA AGCTGATGCA GCCTTGGGGG AGATGGCAGT ACTGAATCAC
TTTATCTCTG AAAGCCTGAT GACCGATGTT TCTGTTTCAA GTGAAATTAA GATTGGCGAT
CACGAATTGA GCCTGCTCAA TATCGCCACG CGCAAGGATC TTCCATTATT GATTTCTATC
TTGAGAAAAG GTGTGGAATC TATAAGCCAG AAAGAGCTAA GTTTAATTAA AAATAAGTGG
CTTGCTAGTG CTTCAGTTGA ACAGAGTGTA GATGCTCCTG TATCGAAACT GTTTAAACAG
TATTTTTCGG TATATCCATT GATAATCATT GCAGTATTCA CCTTTATAGT TTTGACAGTT
ACGGCATTCC TGCTTCCGAA ACTATTATCT AATGAAGTTA TTGCTAAATT TGTGGCTTCT
CGGGCTTTTA CTTATTCAAT GATGCTGCTC ACCAGCATCA TTGTATTAAT CGTCTTACTA
TTGGTTTGGT ATACCCTTGA ACAAAACAGG CAATCAACAT TAAGCGATAC AAAGGAAGAT
TTGACGTTTA TTCTTGAAAG AACTTCAGAA AACCTAGACA CCTGGATTAA TGATCGAAAG
CGATATCTGT CTAGATTAGG AGAGCACCCT GAGTTAGTTG AGCTTACGCA ACACTTATTG
TCTCTGCCTG CAGAAAAGCG TGTATTGAAA GATGACAATA TACAGGGGGA TATCCGTTCG
TTTTTCGAAC GTCATGTAGA GGATTTTGGT CATGTTGGTT TTTTCCTTAT TAATAAGGAT
AGGATTAGCA TCGCTTCACG TAGAAACATT AACTTAGGCT CGAAAAACCT GATTGCAATC
CATGCGCCGG AGTTGCTCGA TCGAGCCTTT AGTGGTGAAA CGGTATTTGT GCCACCTATT
CCATCCGATG TTAAAGTCGG TGAGTACAGC TCAGGTTTCT CGAACCTGAA TGCCTTAAGC
ATGTTTTTTA TCACGCCGGT AAAAGATCAT ACAGGAAAGG TTTTTGCGGT TCTTACCCAG
CGCTTATTAC CTAGTGGCCG CTTATCCCAA ATCTTGCAAC AAGGAAGTAT TGGCCGTTCC
GGAGAGAGCT ATCTAATCAA TCGAGACGGT GGAATGGTCA CCGAAAGCCG CTTCAAAGAC
TCACTGGTAG AAATTGGGCT GCAAAGCATA GATTCAGAAG GTGAATCATT TTTAATGCTG
AAGGATCCAG GTGGCAACAT GACAGAGGGC TACTTGCCAG AACGTTCTTT TACTGAGTTA
CCTTTCACAT TTATGACGCA AGCGATTATC AATCAGGCAC AGCAAGCAAC CGGAAGGGCA
AATATTCAGT CTAATATCGA GGGGTATCGC GACTACCGAG GAGTTGCTGT ATTGGGAGTT
TGGCGCTGGG ATAGCAGACT TGGTTTAGGG GTAACAACTG AGATTGATCT CCAAGAGGCA
CTTGACGCAT TTTATCAAAT GCGTATTCAC CTGATCACAA CGGCAATAGT TGCGCTATTG
CTGGCGATTG CCTCTAGTAT GCTCACTGTA ACTATCGGGC AACGAGCCAC TACTTTTATG
CGAAGGTCCA ATGAGGAGCT TGAAGAGCGG GTTAAAGAGC GGACGATGAG ACTACGCAGT
ATTATCGAGA ATGCTGCGGA CGGTATAATC GTGATGAATA GTAGAGGAAT TGTTCAAAAT
TTCAGTCCTG CAGCTGAAAC AATATTTGGT TTTTGTGCTT CAGAGGTTGT CGGCAACAAT
ATAAAAATGC TTATGCCTGA ACCAACACGA AAAGAACATG ACGGTTATTT AAAGCACTAT
ATTGATGATG TCAAAACCAA AGTTGTAGGT AAAACAAGAG AAGTTGTCGG CCTGCGTAAA
AATGGCGAAA CCTTCGACAT GGATCTTGCG GTAGGTGAGT TCTTCATAGA CGGTGAACAC
CTATTCACAG GAATGGTTCG TGATATTACC GAACGAAAGC GCATGGATAA GGAGCTACGT
TTATCTAAAG AAGATCTTGA AAAAACGCTG TATGAAAAAA CGAGCTTGGA GGAGAAACTT
AAGCAAAATG TGGCCTATAT GACTACTTTG CTTGAGAATT TACCGATAGC CGTTTTTGCC
AAGGATGTTA AAAATGACTA TCGTTTTACT CTGTGGAATC ACGTCGCTGT AGAAATTTTT
GGATTTAAAT CTGGGCAAAT AATTGGCCGC AATGATTATG ATCTATTTTC AACTGAAGAA
GCTAATCATT TTCGTCGTAC AGATGAAGAG ATCGTTAAAC ATCTAGGCAT CAAGGATATA
CAAGAAGAGA CAATAACTAC TTCTCATGGA GAACGCATTC TTCATACGGT AAAAGTGGCG
GTTCCTAACG AAAGCGGTGA ATCGAATATC TTATTAGGCA TAACCCAAGA TATTACTGAT
CGTAAGCAGG CTGAAGAAGA GCTAATGAGA GCGAAGCGGG TCGCCGAAAA TGCAACAAGA
GCAAAATCCG ACTTCCTGGC TAATATGTCT CATGAGATCC GAACTCCAAT GAATGCCATT
ATTGGTATGA GTCATTTAGC TCTTCAAACC GGGCTAGACC GTAAACAGCG TGACTATATC
AATAAAATTC AAAGTGCTTC TGAATCCTTA CTTGCTCTTA TCAATGACAT CCTCGATTTC
TCGAAGGTCG AGGCGGGAAA AATGGAAATT GAGAGAAAGC CGTTTAACTT GAATGATACC
TTGGATAAGT TGGCTCAACT CATAACGGTT AAGACTCGTG AAAAGAAATT GGAACTGCTG
ATAGATACTC ATAAAGACGT TCCTTGTGGG CTGATAGGTG ATTCGTTACG ACTCGGACAA
ATTCTTATTA ATCTGACTAA CAATGCCGTT AAATTCACCG AGAAGGGGGA GGTTGTTGTC
AGCATTGAGA AGGTATGTGT TGATGATGAA CAAGTGACCT TAAAGTTCAC TGTTAAGGAT
ACCGGCATTG GTATGACAAA GGAGCAAATG GGTAAATTGT TCCAGTCCTT TAGTCAGGCG
GATGCTTCCA CGACCCGAAA ATATGGTGGT ACCGGTTTGG GTCTGACCAT CAGCAAAAAA
CTGACGGAGT TGATGGGAGG GGCAATAAGT GTTGAGAGTA CTTTTGGAAA GGGGAGTAGC
TTTGTATTTA CTGCTAACTT CGGCCTTTCA CAAGCAGCAG AAGTCGTCAG CCAGTTACCT
AAGCCTGATT TACGGCATCT GCCCATACTT ATTGTTGATG ACAGCCCTGT TGCTCGGCAG
ATATTACGTC AAAATGGCGA GGCACTCACG TTTGTTGTTG ATGAGGCAAG TAGTGGTGAA
GAAGCTATTG AAAAATTACA TGACTACGAC CAGTTGGGGA CTCCTTTTAA AGTCGTCTTC
ATAGATTGGA AAATGCCGGG CATGGATGGA GTAGAAACTT GCCATCGAAT CAAATCTGAA
GAAAATATCG AGAGTCCTCC AAATATCGTT ATGGTTACAG CCTATGATCG GCATGAGTTG
ATACATGAAA TGGAAGGTAT GGAGGTCAGT GGAGTTTTAA CTAAGCCAGT AACTCAGTCC
AGCATGTTGG ATGCCACTAT GGTTGCTATG GGATATGAAG AGGCTAAACG AGATGAACAA
GCATATGATC TAGGCTTGGA TGCGGCGAAG GCAATAAGGG GAACACATGT ATTACTTGTT
GAAGATAATG ACATAAATCA ACAGGTTGCT ACTGAGTTGC TCGAAATGGC GGGCTTAGTA
GTGACAACAG CCTCTGATGG ACAAGAAGCA TGTGAAAGAG TGAAAACCGA GTTATTCGAC
GTGATACTCA TGGATATTCA AATGCCTGTA ATGGATGGTT ATACCGCGAC ACGACATATC
CGTAAATTTT CAGGTTATGA AGAACTCCCT GTAATAGCTA TGACTGCAAA TGCTATGGAT
GGAGATCGTG AAAAATGCCT GGATGCCGGT ATGAATGATC ATATAGCTAA GCCAATAGAC
CCTGCTTCGA TGTTTGCCGC GCTGGTTAAG TGGGTAACTC CTCAAGAGGG GGCTGATGAG
GTATTTGTTC CGGATGCGAG TGTTAGTGAT GCTGAAGTGA AATTGCCAGA GCTGCCCGGT
GTGAACCTGG AGTTGGGATT GATGCGAGTA GCCGGAAAAC ATAAACTTTA TCTCGATCTG
ATGAAGCGGT TTGTGGCCGA ACAATCGAAT GTCCCTATGC GTATAGAGCA GGCTCTGGCC
ACTGGTGACA TCATGCTTGC TGAGCGCCTT TCCCATACTA TCAAAGGTAT TTCAGGTACT
CTTGGCGCAA TAGAGCTGCA GGAGTTGGCT GCGAAATTGG AAACAGCAAT TCAGGCAGAA
GACGAGAATC AAATCGCAAC GGTTATGCCT GCATTCACAG GTGAGTTGGA ACGTTTGGTG
GAAGCTATAA GAGTCAAGAC TGTCGAAAAA CAGGAACAGG TAACTCATAT TCCACTCACC
GCTGAGGAAC GTAAGAAGAC TCTTGATGTT CTTATTAATA TTAGAGATTT ACTGTCTAAT
GATGATGGCG ATGCGTTAGA TATCTTTTCT GAAAATCACG AACAGTTGTC TATACTGGTA
GAGCCAGAGG AGTTGTCTCG ATTGGAAAGT ACCATTGAAA GTTTTGATTT CCAGGGAGCG
ATAACTGTTG TAGATGATTT ACTCAAAAAT GCCGAGGAAT AA
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| Protein sequence | MNFITRFFSF LLLLCITSAF CNAETIKVGF GYGKPPFVFA STPEGQSEPR GIEVDIMREA
LALRGHDLEV HYFSNNNLVE QLRQGNIDAA TTIPSEQNSS VYYSNQVIYF WNYAVTQPED
RTTLSSIDEL KSRKVLSWQG ASKDLGKSFE QAIPQMNFYR EVEDQSEQVL LFLQKKADTL
VIDWSIFSYW ARYFGYEPER YNQYNIFGGK TWFSVGFSDK SLRDDFSQGL SQLKSNGQYQ
KIYDRLWSAS NLEDNSNKSV LHLTADEQTW LDNHPNIRLG IDQNYPPFDF IGDRGNYSGI
SADYLALINE RLGTDMRVIS GLNWTDVIAG AQSGDIDVIS TIVETKERSA YLNFTRPYIS
FPTIFLTRKD QEPVNAFHDL NRGKLAMVKD FFYEEMILKN YPEIEPYFVN SPLEAIRALD
NGKVDAAIVN YAVANHLILK YDLTSIRVDA ETQLERTFFS FGVRKDWPEL LSVLNKVLAS
IDEEKHKQIT ERWIARPSTV SQVTDEIDLT AKEKAWVASN PVVRVSGDIS WPPFNFKRNG
VTQGFSIDYM NLIAKKAGLS IEYVEGPTWG EFLLMMRDGS LDVMLDIVKT PEREKYLLYT
KPYADNPNAI LSKKSMPYRS LEALFGKTVA VTKGFFYEEI LSREYPQIKI LPLENTYQTM
IAVSVGEADA ALGEMAVLNH FISESLMTDV SVSSEIKIGD HELSLLNIAT RKDLPLLISI
LRKGVESISQ KELSLIKNKW LASASVEQSV DAPVSKLFKQ YFSVYPLIII AVFTFIVLTV
TAFLLPKLLS NEVIAKFVAS RAFTYSMMLL TSIIVLIVLL LVWYTLEQNR QSTLSDTKED
LTFILERTSE NLDTWINDRK RYLSRLGEHP ELVELTQHLL SLPAEKRVLK DDNIQGDIRS
FFERHVEDFG HVGFFLINKD RISIASRRNI NLGSKNLIAI HAPELLDRAF SGETVFVPPI
PSDVKVGEYS SGFSNLNALS MFFITPVKDH TGKVFAVLTQ RLLPSGRLSQ ILQQGSIGRS
GESYLINRDG GMVTESRFKD SLVEIGLQSI DSEGESFLML KDPGGNMTEG YLPERSFTEL
PFTFMTQAII NQAQQATGRA NIQSNIEGYR DYRGVAVLGV WRWDSRLGLG VTTEIDLQEA
LDAFYQMRIH LITTAIVALL LAIASSMLTV TIGQRATTFM RRSNEELEER VKERTMRLRS
IIENAADGII VMNSRGIVQN FSPAAETIFG FCASEVVGNN IKMLMPEPTR KEHDGYLKHY
IDDVKTKVVG KTREVVGLRK NGETFDMDLA VGEFFIDGEH LFTGMVRDIT ERKRMDKELR
LSKEDLEKTL YEKTSLEEKL KQNVAYMTTL LENLPIAVFA KDVKNDYRFT LWNHVAVEIF
GFKSGQIIGR NDYDLFSTEE ANHFRRTDEE IVKHLGIKDI QEETITTSHG ERILHTVKVA
VPNESGESNI LLGITQDITD RKQAEEELMR AKRVAENATR AKSDFLANMS HEIRTPMNAI
IGMSHLALQT GLDRKQRDYI NKIQSASESL LALINDILDF SKVEAGKMEI ERKPFNLNDT
LDKLAQLITV KTREKKLELL IDTHKDVPCG LIGDSLRLGQ ILINLTNNAV KFTEKGEVVV
SIEKVCVDDE QVTLKFTVKD TGIGMTKEQM GKLFQSFSQA DASTTRKYGG TGLGLTISKK
LTELMGGAIS VESTFGKGSS FVFTANFGLS QAAEVVSQLP KPDLRHLPIL IVDDSPVARQ
ILRQNGEALT FVVDEASSGE EAIEKLHDYD QLGTPFKVVF IDWKMPGMDG VETCHRIKSE
ENIESPPNIV MVTAYDRHEL IHEMEGMEVS GVLTKPVTQS SMLDATMVAM GYEEAKRDEQ
AYDLGLDAAK AIRGTHVLLV EDNDINQQVA TELLEMAGLV VTTASDGQEA CERVKTELFD
VILMDIQMPV MDGYTATRHI RKFSGYEELP VIAMTANAMD GDREKCLDAG MNDHIAKPID
PASMFAALVK WVTPQEGADE VFVPDASVSD AEVKLPELPG VNLELGLMRV AGKHKLYLDL
MKRFVAEQSN VPMRIEQALA TGDIMLAERL SHTIKGISGT LGAIELQELA AKLETAIQAE
DENQIATVMP AFTGELERLV EAIRVKTVEK QEQVTHIPLT AEERKKTLDV LINIRDLLSN
DDGDALDIFS ENHEQLSILV EPEELSRLES TIESFDFQGA ITVVDDLLKN AEE
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