Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2857 |
Symbol | |
ID | 5614172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3456523 |
End bp | 3457359 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933776 |
Product | hypothetical protein |
Protein accession | YP_001474592 |
Protein GI | 157375992 |
COG category | [S] Function unknown |
COG ID | [COG3220] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000347655 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGAGC AAGCCAAAGT CGGCCTTGGT CTTAGACGTG AAATGTTAGA TGAGTTTTGC GACTCGACTC CTGATGCTAT CGATTTTTTT GAGGTGGCTC CCGAAAACTG GATGACTCTG GGTGGAAAAT TTGGACGCCA ATTTAAGCAA CTGACCGAGA GAAAGCCTTT TTTTTGTCAT GGCTTATCAT TGTCTATCGG AGGACCGTCC CCTCTCGATA TCCAGTTTGT TAAAGATATA AAAGCTTTTA TGGATCTGCA TAATATCTCA ACTTATTCAG AGCACTTAAG TTATTGTTCT GGCACTGGCC ATATGTATGA TCTCATGCCC ATCCCCTTCA CGCAGGAGGC GGTCATGCAT GTTGTAAAGA GGGTCAAGCA GGTTGAAGAT ATTCTTGAAC GGCCATTGAT TCTCGAAAAT GTCTCTTTTT ATGCGGCTCC GGGAGCCGAG ATGACAGAGT TTGAATTTGT TAACGCTGTG CTAAGTGAAG CAGATTGTAG GCTCTTACTC GATGTGAACA ATATCTATGT TAATTCGGTT AACCATCATT ATGATGCCAG TCAGTTTTTA GGATCTATGC CGACCGAGCG TATTGCTTAT CTGCATATTG CCGGCCATTA CGAAGAAGCT GAAGATCTTA TCGTCGATAC CCACGGAGCC GATATCATCT CGCCCGTGTG GCAATTACTC CGGGAGTGCT ATGAAATCCA TGGGGTGCAT CCGACCCTCT TGGAGAGAGA CTTCAATATC CCCCCAACCT CTGAATTACT AAATGAAATC GATCAGATCC ATGAATATCA GCATGCCGTT CCGAGCCTGC TCTCGAGGAG CGCATAA
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Protein sequence | MSEQAKVGLG LRREMLDEFC DSTPDAIDFF EVAPENWMTL GGKFGRQFKQ LTERKPFFCH GLSLSIGGPS PLDIQFVKDI KAFMDLHNIS TYSEHLSYCS GTGHMYDLMP IPFTQEAVMH VVKRVKQVED ILERPLILEN VSFYAAPGAE MTEFEFVNAV LSEADCRLLL DVNNIYVNSV NHHYDASQFL GSMPTERIAY LHIAGHYEEA EDLIVDTHGA DIISPVWQLL RECYEIHGVH PTLLERDFNI PPTSELLNEI DQIHEYQHAV PSLLSRSA
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