Gene Ssed_2857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2857 
Symbol 
ID5614172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3456523 
End bp3457359 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content45% 
IMG OID640933776 
Producthypothetical protein 
Protein accessionYP_001474592 
Protein GI157375992 
COG category[S] Function unknown 
COG ID[COG3220] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000347655 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGAGC AAGCCAAAGT CGGCCTTGGT CTTAGACGTG AAATGTTAGA TGAGTTTTGC 
GACTCGACTC CTGATGCTAT CGATTTTTTT GAGGTGGCTC CCGAAAACTG GATGACTCTG
GGTGGAAAAT TTGGACGCCA ATTTAAGCAA CTGACCGAGA GAAAGCCTTT TTTTTGTCAT
GGCTTATCAT TGTCTATCGG AGGACCGTCC CCTCTCGATA TCCAGTTTGT TAAAGATATA
AAAGCTTTTA TGGATCTGCA TAATATCTCA ACTTATTCAG AGCACTTAAG TTATTGTTCT
GGCACTGGCC ATATGTATGA TCTCATGCCC ATCCCCTTCA CGCAGGAGGC GGTCATGCAT
GTTGTAAAGA GGGTCAAGCA GGTTGAAGAT ATTCTTGAAC GGCCATTGAT TCTCGAAAAT
GTCTCTTTTT ATGCGGCTCC GGGAGCCGAG ATGACAGAGT TTGAATTTGT TAACGCTGTG
CTAAGTGAAG CAGATTGTAG GCTCTTACTC GATGTGAACA ATATCTATGT TAATTCGGTT
AACCATCATT ATGATGCCAG TCAGTTTTTA GGATCTATGC CGACCGAGCG TATTGCTTAT
CTGCATATTG CCGGCCATTA CGAAGAAGCT GAAGATCTTA TCGTCGATAC CCACGGAGCC
GATATCATCT CGCCCGTGTG GCAATTACTC CGGGAGTGCT ATGAAATCCA TGGGGTGCAT
CCGACCCTCT TGGAGAGAGA CTTCAATATC CCCCCAACCT CTGAATTACT AAATGAAATC
GATCAGATCC ATGAATATCA GCATGCCGTT CCGAGCCTGC TCTCGAGGAG CGCATAA
 
Protein sequence
MSEQAKVGLG LRREMLDEFC DSTPDAIDFF EVAPENWMTL GGKFGRQFKQ LTERKPFFCH 
GLSLSIGGPS PLDIQFVKDI KAFMDLHNIS TYSEHLSYCS GTGHMYDLMP IPFTQEAVMH
VVKRVKQVED ILERPLILEN VSFYAAPGAE MTEFEFVNAV LSEADCRLLL DVNNIYVNSV
NHHYDASQFL GSMPTERIAY LHIAGHYEEA EDLIVDTHGA DIISPVWQLL RECYEIHGVH
PTLLERDFNI PPTSELLNEI DQIHEYQHAV PSLLSRSA