| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2829 |
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| Symbol | |
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| ID | 5613890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3419126 |
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| End bp | 3420385 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933748 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001474564 |
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| Protein GI | 157375964 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.417689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0183937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAGC TGCTCTCTTT CTGGGTTGGC TGGCGCTTTT ATCTGGCTCG CCAGTCTAAT
CGATTCATCA GTTTTATCTC CTTTGCTTCG ACAGCGGGTA TCGCCTTAGG CGTTGCGGTG
TTGATTATCG TGCTCTCTGC GATGAACGGT TTTGAGAGTG AACTCGAAAC AAGGTTACTC
GGTGTAGTTG CACACGCCGA GTTGAGCGGC GTCAATGAGC CGATACATAG TTGGCAAGCT
ATCGCTGATG ATGCTAATAA GATCCCCGGC ATTGTGGCGG CGGCCCCCTT TATACGACTT
CAAGGCTTGG TTCAGAAGCC GGGAGGGTTT CAAGGATTAA GCATTCTGGG AATCGATACC
ATCGAAGAGG CGAAGGTATC AAAAATTTCT GAATTTATGT CGACATCGAC ATGGTCCAAA
TTGGCTCAAC ATGATGCGAA TAATATTGTA TTAGGCAAGA GTCTGGCCGA ATCTTTAGGG
TTAGATGTCG GCGACGCCCT AAGTTTATAT ATGCCTGATA TCAGTGGTAA AAACAGAAGC
GGCTCTCGAA TTGGTGCAGC AAAAAGTTAT CGATTTACCG TTGCAGGCGT GTTTGAACTC
GGTGGGTCAT TGGATCTCAC CACCGCCTAT ATTCCTATGC AATATGCCGC TTCAATACTG
AAAATGGGCG ACGATGTATC AGGTGTCAGA ATCAAAACAC AGCAGGTATT CGATGCGCCA
AGATTGATCA GAGAACTGGG TTACAGCCAG GAGCAATACC TCTACCTCAA TGATTGGACC
CGTACTCAGG GAAATCTGTA TCAGGATATT CAGCTGGTGC GCGGCGTTAT GTATCTGGTA
CTGGCGCTCG TAATCGCGGT TGCCTGTTTT AATATCGTAT CGACCTTAGT GATGGCCGTG
CGTGATAAGC AGTCTGAAAT TGCCATCTTG CTCACTATGG GGATGAAGCG TATTTCAATC
ATGAATATCT TTATCGTGCA GGGAGCGCTG AATGGTCTTT TAGGCTGTGT TATCGGTGGA
GGGCTTGGTG CCATTATTGC TGAAAATCTC AGCGTTATCG CCAAGGCAAT CGAAGATGTT
TTGGGCATTC AGTTGCTATC TGCAGATGTC TATTTTATCG ATTTTCTGCC TTCACAGCTG
CATCTGTCAG ATGTGACTTT AGTGATATTA CTGGCCTTCA TCATGAGTCT CATCGCGACA
CTCTATCCTG CCTGGAAAGC CAGTCAAACC GCTCCAGCAC GCGCATTAGC GGGCAGATAG
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| Protein sequence | MSQLLSFWVG WRFYLARQSN RFISFISFAS TAGIALGVAV LIIVLSAMNG FESELETRLL
GVVAHAELSG VNEPIHSWQA IADDANKIPG IVAAAPFIRL QGLVQKPGGF QGLSILGIDT
IEEAKVSKIS EFMSTSTWSK LAQHDANNIV LGKSLAESLG LDVGDALSLY MPDISGKNRS
GSRIGAAKSY RFTVAGVFEL GGSLDLTTAY IPMQYAASIL KMGDDVSGVR IKTQQVFDAP
RLIRELGYSQ EQYLYLNDWT RTQGNLYQDI QLVRGVMYLV LALVIAVACF NIVSTLVMAV
RDKQSEIAIL LTMGMKRISI MNIFIVQGAL NGLLGCVIGG GLGAIIAENL SVIAKAIEDV
LGIQLLSADV YFIDFLPSQL HLSDVTLVIL LAFIMSLIAT LYPAWKASQT APARALAGR
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