Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2811 |
Symbol | |
ID | 5613668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3392632 |
End bp | 3393504 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933730 |
Product | succinyl-CoA synthetase, alpha subunit |
Protein accession | YP_001474546 |
Protein GI | 157375946 |
COG category | [C] Energy production and conversion |
COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTATCT TAATCAATAA AGATACTAAA GTTATCTGTC AGGGTTTCAC TGGCGGTCAA GGTACTTTCC ACTCTGAGCA AGCTATCGAT TATGGTACGC AGATGGTCGG TGGTGTATCA CCAGGGAAAG GCGGTCAGGT TCACTTAGGT CTTCCGGTAT TTAATACTGT TAAAGATGCC GTAGCTGAAA CAGGTGCAAC AGCAACTGTT ATCTATGTAC CTGCACCATT TTGTAAAGAT GCGATTCTTG AAGCGATTGA CGGTGGCATT GAGCTAATCG TTTGTATCAC TGAAGGGATC CCAACGTTAG ATATGCTTCA GGTTAAAGTT AAGCTTGAAG AGACTGGCGT TCGCATGATC GGTCCTAACT GTCCGGGTGT TATCACACCG GGTGAGTGTA AGATTGGTAT CATGCCTGGT CACATCCATA AGCCTGGTAA AGTCGGTATT GTTTCTCGCT CAGGTACGCT TACGTATGAA GCGGTTAAGC AGACTACTGA TGAAGGTTTC GGTCAGTCTA CTTGTGTAGG TATCGGTGGT GACCCAATTC CCGGTACTAA CTTCATCGAC GTTTTGGAGA TGTTCCAAAA TGATCCGCTA ACCGAAGCTA TCGTAATGAT TGGTGAAATT GGTGGTACTG CTGAAGAAGA AGCAGCTGAA TATATCCAGG CTAACGTGAC TAAGCCTGTT GTTTCATACA TTGCCGGTGT TACAGCACCT GAAGGTAAGC GTATGGGCCA CGCTGGCGCG ATTATCGCCG GCGGTAAGGG TACGGCTGAA GACAAGTTTG CCGCTCTTGA AGCCGCAGGT GTGACTACGG TTCGTTCACT TGCTGAAATC GGTAAAGCGT TACGTACTAA GACGGGTTGG TAA
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Protein sequence | MSILINKDTK VICQGFTGGQ GTFHSEQAID YGTQMVGGVS PGKGGQVHLG LPVFNTVKDA VAETGATATV IYVPAPFCKD AILEAIDGGI ELIVCITEGI PTLDMLQVKV KLEETGVRMI GPNCPGVITP GECKIGIMPG HIHKPGKVGI VSRSGTLTYE AVKQTTDEGF GQSTCVGIGG DPIPGTNFID VLEMFQNDPL TEAIVMIGEI GGTAEEEAAE YIQANVTKPV VSYIAGVTAP EGKRMGHAGA IIAGGKGTAE DKFAALEAAG VTTVRSLAEI GKALRTKTGW
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