| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2798 |
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| Symbol | |
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| ID | 5613514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3377584 |
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| End bp | 3379644 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933717 |
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| Product | aspartate carbamoyltransferase |
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| Protein accession | YP_001474533 |
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| Protein GI | 157375933 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1
[COG3302] DMSO reductase anchor subunit |
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| TIGRFAM ID | [TIGR02951] DMSO reductase, iron-sulfur subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.604393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGAT CTACCATTGA AGGCGCAACA GATAAGGTAT CTCCAAAGTG TGGGGATGTG
GGTGTATATA TGCCCGGGAA AACGATAAAA GCGGCATCTA ATCGACCCGA AGTCGGACAG
GAGCAGTTGG GGCGCTCCAA CCATTGGGAG GTGCGCCCCC AAGAGCAGGC CTATGCCTAT
CTGCCCGATC CCGGGAATAA GAGTGAAATT GAAAACCGTT ACGGCAAACG TATCGATCTG
GTGGAGTTGA CCGACAACCC GGTGGGGCGA TCCTTGTTTA TTAACGGTAA TCCTGAGGTC
GGGACGAATC CGGATCGTAA TAAGCAACAC GGTTTCTTCT TCACCGCCGA TAACTGTATC
GGCTGTCATG CCTGTGAGTC GGCCTGCTCG GAGAAAAATG ATAATCCCGC TCATCTGGCA
TTTCGCTCTG TGGGTTACGT CGAAGGAGGC ACCTATCCGG ATCACAAGCG AATGAACATC
TCCATGGCCT GTAACCACTG TGACGACCCG GTCTGTCTGA AAGGGTGTCC GACCCGGGCC
TACACTAAAC ACGCCGAGTA TGGCGCCGTC TTGCAAGACC CTGAAACCTG TTTCGGTTGC
GGTTATTGTA CCTGGGTGTG TCCTTACAAT GCCCCGCAGC TGGATCCGGT TGAGGGACGG
GTCTCTAAGT GCAACATGTG TGTCGACCGC CTCGAGGTGG GGTTAAAGCC CGCCTGTGTG
TCGGCCTGTC TGGGTAATGC GCTGGATTTC GGTGTGATAG AAAATACCCC CGAAAATCGT
GAGCAGTGCA AAACCACCAT TCCGGGCTTT CCATCGCCCG AGATCACTCA GCCTAATATC
CGTTTTCAAC AAACCAAATC GCTGCCCGAG GAGATGACGC GCACCGATGA TATGCCGGTT
AAATACTGTA AAGGCAGCGA TGGTCAATAT CGTCCAAAGG TAGATCAAAA AGTCGGTAAG
AAGATCTATT GGAATCTGCC TAAGCTTAAC AGCCGTGAAA ATCCGCTGGT CCTGTTTACT
CTGCTGGTTC AGGCGGCGCT GGGCACCTTT ATCATTCCTT TTTCAGGGGC TTTATTCGGC
GTAGAAACCT TTAAGCTGTT TATGGCATCG AACCTCTTTC TGCCTCTGGT GCTCTTGTCG
TTAGGGATGA CATCATTAGG CCTGTTTATG AGCGTGACAC ATCTGGGTAG GCCCTTTCGT
TTCTATCGTG GCTTCAATAA TCTGCGTTAC TCGCCCATGA GTCGTGAAGG ATTCGGATTA
GCGCTGTTTT CGGCCTTTTT GGGACTGACT GCGCTGCTTC TTGCACCATC CAATCTCTGG
GTAAATACAA TGCTGACCAG TTTAGGGCTA GACCTAACCT TGCTGACATC AACTCTGCCG
CTTGAGAATG GCGTCGTAAT CACCGGGCTA TTGGCTAGCG CTTCGGGATT AGCGGGCTTG
TATTACATGA ATCAGTGTTA CCAGATTAAG GCGAGGCCGT TCTGGAACCA TTGGCAAACG
GCGACCAGCT TTGTGGGCAA CAGTTTGTCT CTGGGAGCCA TGGTGAGCTG CATGGTTATG
CTGCTTTCAA CCGCAGTCGA GCCTTTGCCT TTGATGCGCG CAGTACAAGC ATTTGGTTTC
ATATTTACTG CGGGACTGGT TATCGAGGCC GTAGGTCTTA TCGGTCATAA CCGGACATTT
AATCGAAGTG AAGATGAAGG CGGCGCCGCA CATTACATCC AGTGCACCAG CTTCGGTAAA
ACTTACCTGC TACGCAACGT GTTACTGGCC GTTAATATTC TCGCCGCGAG CGGCTTGTTA
TTAGCGGGCT TCTTAGAAGT GAGTGAGTCT CCGGCGAGTC AATCGATAGC AAATGAGCCG
CTTTACCTCA TTGCCTGGGC AAGCGTAAGT CTGATTAACC TGATCACGGC GATGATCGGC
AGGGCGCTGT TTTATAACTT AGTGATCCCA ACGACCATGC CTGGCGCCTT CTTCTGGAAA
AACAAAGGTT TTGAGCAACA CGCCAGAGAC ATAGGTTTAG CCGATAACCC CGCCACCGGG
GTTGCACCAC TTGCTCATTG A
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| Protein sequence | MSRSTIEGAT DKVSPKCGDV GVYMPGKTIK AASNRPEVGQ EQLGRSNHWE VRPQEQAYAY
LPDPGNKSEI ENRYGKRIDL VELTDNPVGR SLFINGNPEV GTNPDRNKQH GFFFTADNCI
GCHACESACS EKNDNPAHLA FRSVGYVEGG TYPDHKRMNI SMACNHCDDP VCLKGCPTRA
YTKHAEYGAV LQDPETCFGC GYCTWVCPYN APQLDPVEGR VSKCNMCVDR LEVGLKPACV
SACLGNALDF GVIENTPENR EQCKTTIPGF PSPEITQPNI RFQQTKSLPE EMTRTDDMPV
KYCKGSDGQY RPKVDQKVGK KIYWNLPKLN SRENPLVLFT LLVQAALGTF IIPFSGALFG
VETFKLFMAS NLFLPLVLLS LGMTSLGLFM SVTHLGRPFR FYRGFNNLRY SPMSREGFGL
ALFSAFLGLT ALLLAPSNLW VNTMLTSLGL DLTLLTSTLP LENGVVITGL LASASGLAGL
YYMNQCYQIK ARPFWNHWQT ATSFVGNSLS LGAMVSCMVM LLSTAVEPLP LMRAVQAFGF
IFTAGLVIEA VGLIGHNRTF NRSEDEGGAA HYIQCTSFGK TYLLRNVLLA VNILAASGLL
LAGFLEVSES PASQSIANEP LYLIAWASVS LINLITAMIG RALFYNLVIP TTMPGAFFWK
NKGFEQHARD IGLADNPATG VAPLAH
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