| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2783 |
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| Symbol | |
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| ID | 5613139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3355479 |
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| End bp | 3357551 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933702 |
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| Product | methyl-accepting chemotaxisprotein |
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| Protein accession | YP_001474518 |
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| Protein GI | 157375918 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.468562 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGA CCATAAAGGT AAAACTCATT GCAACGGTTT GTGTTGCATT ACTCGCCATC
AGTGCTTTTT TTATCACCAA CATGATAAGT ACCGAAGTTG CGGTACTCGA AGAGCAGGAA
AAAAACGTCA CAGATAAGGT CGAGCTGCTC ATTAACGATA AGTTGAAGGG CCAGGTAGAC
AGTATCACCC TGTCGATATC CGGGCTGTAT GAGCAATCTA AAGTCACGAA CATCAAATCG
GCTTTACAAG CCGAGCTGAC AACGTTCACC GACACCATCA AAAGCATCTA CAACACTAGC
GCCTCACATG AAGAAGCCGA AATAGCTGTT TATGCCTTCA TCAACGGATA TCGTTGGGAT
AATGGACGTT ATATCTTCGC CTATGACGCC GACTCAATAG TAAATGTGGC CAATGGTGCT
CATAAAAGCT ACATAGGCAA AAATGAGAAG GATGCGACCG ACAAGAAAGG CAATTACTAC
GGTCGTGATA TTGTAAACGC GGCGAAACGA CAGGAGGTTG GTTTTACCAG CTACTACTTC
CTCAACGAGA CATCGGGCAA GGTTGAGGAG AAGATCTCAG CCTCCTTCTA TTTCAGGCCG
ATGAATCTGG TCATCGCCAC CGGTGAATAT GTCAGCACCT TGAAGCAGGA CATGATTGAC
GAAGTACTTA AAAATATTAC CGCCTCGAAA TACGGTAAGA ATGGTTACTT CTGGATCCAG
GACAATCAAG GGAAAATCCT TGCCCATCCT AAGCAGGAGG TCGTCGGTAA AACGCTAAAG
AGCACCAAAC AATCCGTAGC CAGCCTCAGG GGGAAGGATG ATGCCTTTGT ACGCATGGAG
TTTGAAAACC CGCAAACCGG ACAGACGGAG CAGAAGATAG GTTATGTGCG CCGTATCCTG
CCCGAATGGG GCTGGATTAT AGGTACAGGG GCTTACCTGA ATGATGTGAC GGTGATCCAG
GAAAGCTTGA CCAATGCTAC CGAAGAGATT TTTACCGAGA AGGTCACACA AAGCATCATC
TTTGCTGCTG TACTCTTTAT CTTTGCGTTA TTGGCATCTG TATGGGTCGT CAGCCATATC
ATCAAAGAGC TGGTGATACT CAAAGATAGG ATCGATACAC TCTCAACAGG TGAAGCCGAC
CTGACCTCCC GCCTGGATAT TCACTCCAAT GATGAGGTGG GCGACATCAG CCAATCGGTC
AATAACTTCA TCGGTTACCT GCAGTCTATG ATGTTGGAGA TCTCTCAGGC CACGGTTCAG
ATCACCGAAG ATATTTTGCA GCTTAACGCA CAATCTGAGC GCAATAATGT CGCACTGAAC
ACCCACTCCT CTGAGACTGA GCTGGCTGTT ACCGCCATCA CAGAAATGAG TTCAACTGCC
GACACCGTAG CACAGAGCGC GGTTCAAACG GCGTCGAATA CACAAAGCGC CAACGAAGAG
GCTATGGCAG CGAAAGAGAT CGTCTCCGAT GCTTCCAGCA GTGTAATGGC ACTAGTCAAT
GAGGTCGATG AAGCATCGAC TCGCATCCAT ACCATGAATA CCAATACTCA ACAGATCGTA
TCAGTGCTTG GTGTGATTGG TGGCATTGCC GATCAAACCA ACTTGCTGGC ACTCAATGCA
GCAATCGAGG CTGCCCGAGC CGGAGAACAG GGACGCGGCT TCGCTGTGGT CGCCGATGAA
GTGCGTACTT TGGCGGCGCG AACTCAGGAC AGCACCGCAG AGATTGACGT GATATTATCC
CGTTTAACTC AAGATGCGGC CGGTGCCGTC GAAGTGATGG ATGCAACGAA AAAGAGTTGC
CAACAAGCGG CAGAAAAAAC CTCCAGGGTC ACCGAAAGCT TAGATATCAT GTCTGACTCT
GTAGTTCTGA TTAACGATCT CAGTTCGCAG ATAGCGACGG CATCCGAAGA GCAAAGCTCG
GTCACCGAAG AGATCAACCG CAACATGTGT ACCATTCAGG CAACGGTACA GGAGCTCACT
CAAAACGGCG TAGAAGCCGC CGAGAGCACT CATAACCTGG CTGCGGCTAA CGAGCAACTC
ACCGCGCTGG TGAGTAAGTT TAAACTGTCG TAA
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| Protein sequence | MKMTIKVKLI ATVCVALLAI SAFFITNMIS TEVAVLEEQE KNVTDKVELL INDKLKGQVD
SITLSISGLY EQSKVTNIKS ALQAELTTFT DTIKSIYNTS ASHEEAEIAV YAFINGYRWD
NGRYIFAYDA DSIVNVANGA HKSYIGKNEK DATDKKGNYY GRDIVNAAKR QEVGFTSYYF
LNETSGKVEE KISASFYFRP MNLVIATGEY VSTLKQDMID EVLKNITASK YGKNGYFWIQ
DNQGKILAHP KQEVVGKTLK STKQSVASLR GKDDAFVRME FENPQTGQTE QKIGYVRRIL
PEWGWIIGTG AYLNDVTVIQ ESLTNATEEI FTEKVTQSII FAAVLFIFAL LASVWVVSHI
IKELVILKDR IDTLSTGEAD LTSRLDIHSN DEVGDISQSV NNFIGYLQSM MLEISQATVQ
ITEDILQLNA QSERNNVALN THSSETELAV TAITEMSSTA DTVAQSAVQT ASNTQSANEE
AMAAKEIVSD ASSSVMALVN EVDEASTRIH TMNTNTQQIV SVLGVIGGIA DQTNLLALNA
AIEAARAGEQ GRGFAVVADE VRTLAARTQD STAEIDVILS RLTQDAAGAV EVMDATKKSC
QQAAEKTSRV TESLDIMSDS VVLINDLSSQ IATASEEQSS VTEEINRNMC TIQATVQELT
QNGVEAAEST HNLAAANEQL TALVSKFKLS
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