Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2764 |
Symbol | |
ID | 5612477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3332512 |
End bp | 3332847 |
Gene Length | 336 bp |
Protein Length | 111 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933683 |
Product | nitrite reductase (NAD(P)H), small subunit |
Protein accession | YP_001474499 |
Protein GI | 157375899 |
COG category | [P] Inorganic ion transport and metabolism [R] General function prediction only |
COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.140502 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTGGT TAGCTATTTG CGAAGAGAGT GCGCTGCCGG TGTTTGGCGG GATCGCAGCA TGGGTAGAGG GTAAAGCCGT TGCCATTTTC AATCTGGGCG AGCAGGGCAT ATTTGCCATG GATAACACAG ACCCTGCGAC TGGCGTCGGC GTGCTGTCAC GGGGCTTAAT CTGCGATCTG CAGGGGGATA TTTTTGTCGC TTCACCTCTG CATAAACAAC ATTACAGCTT AACAAACGGG CAGTGTATGG AAGATGAAAG CTTAAGTGTT GAGCTGTATT GGATCAAATG TGAACAGGGC AAGGTGTTAA TCTGCACCGC AATTGTAGGG GAATAA
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Protein sequence | MNWLAICEES ALPVFGGIAA WVEGKAVAIF NLGEQGIFAM DNTDPATGVG VLSRGLICDL QGDIFVASPL HKQHYSLTNG QCMEDESLSV ELYWIKCEQG KVLICTAIVG E
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